Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03198 ATGGAGCTTTTCTCACCTCAATCCTTGCTCTTCCTCTCCCTTCTCCTCTTCTTCTATCTCTACTCTCTTCAATTCCTAACCACAAAAAAACCCAAACAAGGCTTCAAAATCTACCCTCTAGTTGGAGCCTTACCTGAATTCCTGCTGAACCGCCACCGCTTCCTCGATTGGACCACCCAAGTCCTCCGCGACTGTCCCACCAACACCGCCGTGTTCTACCGCCCCGGCAAGATCCACGGCATCATAACGGCGAACCCTGAAAACGTGGAACACATGCTTAAGACAAAATTCGAAAACTACCCAAAGGGTGAACGCTTCATCTCCCTCCTCGAGGATTTCCTCGGTAAGGGAATCTTCAACTCCGACGGCGACCTCTGGAAGGTTCAGAGGAAAACCGCGAGCTACGAATTCAACACGAAATCGCTACGGAACTTCGTCATGGAGAACGTCACGGTGGAAACGCAAACGAGGCTTCTCCCATTTCTCTCCAAAGCCTCAGAGACAAACAGAGTCCTCGATTTGCAGGCAGTTCTGGAGAGATTCGCGTTCGACAACGTGTGCAAGCTCGCGTTCAACGTCGACCCTGGATGTCTCGGCGGCGACGGCACCGCCGGCGCAGAGTTCATGGCGGCGTTTGAGGAGGCCGCCACGTTGAGTTCTGGAAGGTTCATGTGTGTTCTGCCAGTGATTTGGAAAACCAAGAGGCTCTTCAACGTGGGAACAGAGCGAAGGTTAAGGGAATCAATCGCAACCGTTCATGAATTCGCGGACGAGATCATACGGTCCAGATTAGAAGCCAAGGGCCCCACACGTGACGAGGACTTGCTTTCACGGTTCATCGGACCAGAGGATTGCTCGCCGGAGTTTCTACGCGACATTGTGATAAGCTTCATCCTCGCTGGACGCGATACGACGTCGTCTGCGTTGAGCTGGTTCTTCTGGATTCTCTCTTCTAGACCCGACGTGAAGGGAAAAATCCTCGACGAGAACGGAAGTGAAACGGCGTCGTTTGGATATGAGGAGCTGAAGGAGATGAATTACTTGCACGCGGCGATTTCCGAGACGATGAGGCTGTACCCGGCCGTGCCGGTGGACACGAAGATGTGCCTAAACGACGACGTTTTGCCGGATGGAACGAGGATTGAGAAGGATTGGTTTATAAGTTACCACACGTTTGCGATGGGGAGGATGGAAAGCGTGTGGGGGAAAGAGTGTAGTGAATATAAGCCCGAAAGGTGGTTAGATGAGAATGGTGTGTACCGAAGTGAGAGTCCGTTTCGGTATCCGGTGTTCCATGCGGGTCCGAGAATGTGTCTTGGGAAAGAAATGGCTTATATTCAGATGAAGTCCATTGCGGCTTCGGTGATGGAGAGGTTTGAGATTGATGCGGTGGATAAGGATGTGTGTCCCGAGCATCTTTTGGCTTTGACGTTGAGGATGAAGAACGGATTGCCCGTAAGGGTAAAGGTCAGGGACTCAGGAAGAGAGACGTGA 1494 0.5201 MELFSPQSLLFLSLLLFFYLYSLQFLTTKKPKQGFKIYPLVGALPEFLLNRHRFLDWTTQVLRDCPTNTAVFYRPGKIHGIITANPENVEHMLKTKFENYPKGERFISLLEDFLGKGIFNSDGDLWKVQRKTASYEFNTKSLRNFVMENVTVETQTRLLPFLSKASETNRVLDLQAVLERFAFDNVCKLAFNVDPGCLGGDGTAGAEFMAAFEEAATLSSGRFMCVLPVIWKTKRLFNVGTERRLRESIATVHEFADEIIRSRLEAKGPTRDEDLLSRFIGPEDCSPEFLRDIVISFILAGRDTTSSALSWFFWILSSRPDVKGKILDENGSETASFGYEELKEMNYLHAAISETMRLYPAVPVDTKMCLNDDVLPDGTRIEKDWFISYHTFAMGRMESVWGKECSEYKPERWLDENGVYRSESPFRYPVFHAGPRMCLGKEMAYIQMKSIAASVMERFEIDAVDKDVCPEHLLALTLRMKNGLPVRVKVRDSGRET. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03198 497 SUPERFAMILY Cytochrome P450 34 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 Gene3D Cytochrome P450 16 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 CDD CYP86A 69 484 - -
Seca1g03198 497 Pfam Cytochrome P450 37 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Seca1g03198 497 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03198 497 PANTHER CYTOCHROME P450 23 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03198 Seca-Chr1 89560876 89562390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03198 34 491 Cytochrome P450 AT3G56630 63.966 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03198 - - gmx:100812147 746.503