Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03191 ATGGCTGAATCATTTGCATTTGATGTTGCTCATTCACTGCTGGGGAAGCTTGCTTCTTATGCCTATGAAGAAGCTTCTCAAGCCTATGGTGTGTATCATGATCTGCAAAGGATCAAAGACACTTTGTCAATTGTCAAAGGTGTGCTATTGGATGCTGAGGAGAAGAAGGACCAAAAACATGGGTTGCTTGAATGGTTGAGGCAGATTCAAAACGTCTTCTCCTATGCTGAAGATGTATTGGATGAATTTGAATTCCATTACAAGCGAAAGCAAGTTGTCAAAGCTTCTAGAAGCACCAAGATGAAGGTAGGCCACTTCTTTTCTTCTCATAATCCTCTTGTTTTTCGTTTTAGGATGGCTCATCAAATCAAAGATGTTAGGGATAGATTGGATAAGGTAGTAGCTGATGGGAACAGGTTTGGTCTTGAGAGAAGAATTGATGTTGATCCCAGACTTGTTCTACAAAAGAGAGAAATGACTTATTCCCATATTGATGCTTCTGATGTGATAGGAAGGGAGAATGATAGGGAAGAAATTGTCAAGCTTCTGATGCAACCCCATCCTCATGGGGATGGTGATGGTGATACAAGTCTTTGTGTTGTTCCCATAGTGGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGATGGATGAACTTTTCCAATTGAAAATGTGGGTGTGTGTCTCTGATGATTTTGACATTAGGCAGATAGTTATTAAGATCATCAACTCTGCTTCGACTTCTACTTCAACTCCAGCTCATGCTCACCAAGAAAACATTAACCACTTAGATATGGAGCAGCTAGTAAGTCATCTTAGATATAAACTTTCTAGTCAAAAGTTTTTACTTGTCTTAGATGACATATGGAATGATGATCGTGCCAAATGGATTGGGTTGAAAGATTTGATAAAAGTTGGTGCAATAGGAAGTAAAATCTTAGTCACAACACGTAGCAACTCAATTGCTTCAATGATGGGGACAGTTGATCCTTATGTTTTAAAAGGCCTTTCTTCAGAGAATTGTTTATCTCTATTTGTGAAATGGGCATTCAAGGAAGGTGAAGAAGAAAAGTATCCAAATCTTGTGGAGATTGGAAAAGAAATTGTGGGAAAATGTCAAGGGGTTCCACTAGCAGTGAGAACATTAGGAAGTTCCTTGTTCCCAAAATTTGATTTAGATAAGTGGAAATTTGTAAGAGACTCTGAGATATGGAACTTAGAACAAAAGGAAAATGATATTCTACCTGCTCTGAAGCTAAGCTATGATCAAATGTCATCCCACTTGAAGCACTGTTTTGTTTACTTTTCCCTTTTTCCTAAAGATCATGGCTTTTATAGTTCCTACATGAGTTATCTTTGGCTACCCGTTGGATTACTTCAATCCCTGGATGGGAGTAAAAAACCAGATGATATTACAAGACAATACATAGATGAGTTACACTCAAGATCTTTTCTTCAAGATTTTGAAGACTTTGGAGACAATATTTATGCTTTCAAAGTGCATGATCTTGCACTGTATGTTGCGAAAGAGGAGTTTGTAGTGGTAAACTCCCATACTCGGAATATACCTGAGCAAGCAAGGCATTTATCAATTCTTGAAACTGAATCACTTGGCAATGATTTGTTCCCCAAGTCCAGAAGTGTGAGAAGTATCCTATTTCCCATCCATGGAGTGGGTCTTGACAATGAAACTCTTTTGGATACATGGCTATCAAGATACAAATACTTACGAGTTTTAAATTTAAGTGATTCTTCATTTGAGACTCTACCTAATTCAATTGGGAAGTTGGAGCATTTGCGAGTGCTTGACCTTTCTTTTAACTCCAAAATCAAAAGACTTTCACGTTCTATATGCAAGCTCCAAAATTTGCAATATTTGTCACTCAAAGGATGCATGGAGCTTGAAACATTGCCTAAAGGATTAGGGAAGCTGATCAGCCTTCAAAAACTATATATAACAACAAAACAATCAGTTCTACCACAAATTGAATTTGTAAGCTTGACCCATCTTCAATTGTTGAGTTTTAATTTTTGTGACAATTTGAAGATTTTGTTTGACAAGGCACAACTCACTTCCCTTGAAGAATTGTATGTTGTATCATGTGGGAGCCTAGAGTCCTTACCACATTATATTCTCCCTCAATTACAATCTCTATTTGTTGCAAACTGTAAGATGTTAAACCTGTCATTGAAGGATGAAAGCCCAATGAGGAACTCTGAGATGGTACAACAATCAGTGAACCATGAAAACCCAATGCAAAGATTGAGGATGAAATTTATGCTTCTTAGGGATTTTCCAGAGCTTCTAACATTACCTCAATGGATTGGAGGAGCTGCAGGCACTTTAGAGGCCTTGTCAATTTTTAATTTTCCTAATCTGAAGATGCTTCCTGAGTGTCTAACAACAATGACTCATCTTAAGAGACTCCGAATTGGTAACTGTCCTCAACTGCTGAGTCTTCCAAGTGACATGCATCGCCTCGCTGTCCATCTTGAAAAATTGAGGATAGATGGTTGTCCTGAATTGTGCAGAAAATGTCAGCAGCAATCTGGTGAGTATTGGCCCATCATTTCTCACATCAAAAACCTTTTCATTGAAGAACCAAGAGAAGAGGAAGAGGAATGA 2649 0.3824 MAESFAFDVAHSLLGKLASYAYEEASQAYGVYHDLQRIKDTLSIVKGVLLDAEEKKDQKHGLLEWLRQIQNVFSYAEDVLDEFEFHYKRKQVVKASRSTKMKVGHFFSSHNPLVFRFRMAHQIKDVRDRLDKVVADGNRFGLERRIDVDPRLVLQKREMTYSHIDASDVIGRENDREEIVKLLMQPHPHGDGDGDTSLCVVPIVGIGGLGKTTLAKLVFNDKRMDELFQLKMWVCVSDDFDIRQIVIKIINSASTSTSTPAHAHQENINHLDMEQLVSHLRYKLSSQKFLLVLDDIWNDDRAKWIGLKDLIKVGAIGSKILVTTRSNSIASMMGTVDPYVLKGLSSENCLSLFVKWAFKEGEEEKYPNLVEIGKEIVGKCQGVPLAVRTLGSSLFPKFDLDKWKFVRDSEIWNLEQKENDILPALKLSYDQMSSHLKHCFVYFSLFPKDHGFYSSYMSYLWLPVGLLQSLDGSKKPDDITRQYIDELHSRSFLQDFEDFGDNIYAFKVHDLALYVAKEEFVVVNSHTRNIPEQARHLSILETESLGNDLFPKSRSVRSILFPIHGVGLDNETLLDTWLSRYKYLRVLNLSDSSFETLPNSIGKLEHLRVLDLSFNSKIKRLSRSICKLQNLQYLSLKGCMELETLPKGLGKLISLQKLYITTKQSVLPQIEFVSLTHLQLLSFNFCDNLKILFDKAQLTSLEELYVVSCGSLESLPHYILPQLQSLFVANCKMLNLSLKDESPMRNSEMVQQSVNHENPMQRLRMKFMLLRDFPELLTLPQWIGGAAGTLEALSIFNFPNLKMLPECLTTMTHLKRLRIGNCPQLLSLPSDMHRLAVHLEKLRIDGCPELCRKCQQQSGEYWPIISHIKNLFIEEPREEEEE. 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03191 882 Pfam NB-ARC domain 194 430 IPR002182 GO:0043531
Seca1g03191 882 Gene3D - 423 519 IPR036388 -
Seca1g03191 882 PANTHER DISEASE RESISTANCE PROTEIN RP 37 847 IPR044974 GO:0006952
Seca1g03191 882 Gene3D - 10 124 - -
Seca1g03191 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 442 IPR027417 -
Seca1g03191 882 CDD RX-CC_like 6 133 IPR038005 -
Seca1g03191 882 Gene3D - 153 337 IPR027417 -
Seca1g03191 882 Pfam Rx N-terminal domain 11 97 IPR041118 -
Seca1g03191 882 Gene3D Ribonuclease Inhibitor 761 860 IPR032675 -
Seca1g03191 882 Gene3D Ribonuclease Inhibitor 563 760 IPR032675 -
Seca1g03191 882 Pfam Leucine rich repeat 583 639 IPR001611 GO:0005515
Seca1g03191 882 PRINTS Disease resistance protein signature 602 618 - -
Seca1g03191 882 PRINTS Disease resistance protein signature 380 394 - -
Seca1g03191 882 PRINTS Disease resistance protein signature 200 215 - -
Seca1g03191 882 PRINTS Disease resistance protein signature 283 297 - -
Seca1g03191 882 SUPERFAMILY L domain-like 509 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03191 Seca-Chr1 89313436 89316084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03191 201 850 WRKY Transcription Factor Family AT5G45050 22.754 9.48e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03191 - - gmx:100795479 1192.18