Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03186 ATGCCTGAACCAACGCTCGATCCTCACCCGCCGGAGCCGCCGCAGGCATCCGATGTCGCCTTCGACGAATTCTCCGCCGAGTTCCAGAACCTCCCCATCCCCTCCATGGACTCTCTCTTCCACAACGACAATTTCCCATCTGAACCCTTCCCTTCCGATCTGGAGGAATTCGCCATGGATTTCGGCGAAAATGGAGACTTCGACATCACCTTCGACGACTTTGACGCCTTCTGCATCCCCTCCGACGCCGAAGATTTCCTTCTCCCAGATGCATGCAACCCTACCGGCGCTTCAATTTCGCCGTTGATCGACGATCGTGACGATTCCTCCGCGAAGAATTCCGATTACGGCGTCGTTAATTTCGATTCGCTGGAATCCGGCGCTTCTGCGGTTTCCGGCGACCGAAGCTCCGGTGTTTCTAGGTTTCTCAATTCGGAGTCGGTTTCGGCGGATAATTTGTGCAAACAGGATTCGCCTAGCTCCGGGGATGTTAAAGTTTCAAGTTGTCCGTCGCCGGAGTTTGAGCACTGCGACCGGGAAGAGTCTTCGAATGGATCGGTTTCGTCTCAGGGTTCGGGTAATGGTGGGTCGGGTGTATACGAAGCTATGAACTCGCCCTCACCTGATTCTGGCCGTTATGAGAGGGATATTTCATCTTCTCATGCACATGCAGTTCAAGATAAAGATATAAAATTGGAGGAAAATGGCAAAGGTTGTGATCTAAAGAGGAAAAAAGAGCATAGTGAAGGAAGTGCTGAGAATAGAACTGCCAAATACAGGAAGTCCTCCTCAGTGGAAAACAAGATCCAACAACAATCTCAATCTGGTGTTAATGACCTTGATGATGAGGACGAGAAGAGGAAGGCCAGGTTAATGAGGAATAGGGAAAGTGCACAGCTTTCAAGGCAGAGGAAAAAGCATTATGTGGAGGAGCTTGAGGAGAAGGTGAGATCAATGCATTCCACAATTACTGATCTGAGTAGTAAGATATCCTATGTCATGGCTGAGAATGCAACTCTTAGACAGCAATTGGGTGCTGGTGTGATGTGTCCTCCTCCTCCACCAGCTCCAGGGATGTACCCTCATCCTCCCATGCCACCCATGCCTTATCCTTGGATGCCATGTGCTCCCTATGTTGTTAAGCCTCAAGGGTCTCAGGTTCCTTTGGTTCCCATTCCTAGATTGAAGCCTCAGCAATCAGCTTCAGCCTCCAAGAGCAAAAAGTCTGAGAGTAAGAAGACTGAGGTGAAAACTAAGAAGGTTGCCAGCATTAGTTTGTTGGGTTTATTTTTCTTTATCATGCTTTTTGGTGGACTTGTTCCTCTGGTGGATGTTAATTTTGGAGGTTTAGTGGATAATTTTCCTGGTAGGTCTAGCTATGTTAGTGATAAGTTTTATGGTCAGGGTGGAGGGAAGGTTTGGCCTGTAAATGGTCATAAGAATGGATCTGAAAGGTTTAGTATTTCTGATAGAGTTAATTATGACAGAGGCCGGAAACTAGAACAAACGCATGAACAGCAAGATCCTCATAGGAGTAATTCCAGTGAGCCTCTCACTGCTTCTTTGTATGTTCCTAGGAATGATAAAATGGTGAAGATTGATGGGAACTTGATAATCCATTCTATAATGGCCAGTGAGAAAGCCATGGCATCTCAAACTGCTAAGGCAAAGAAGGACAAGAGTGAAACTGGTTTGGCCATTCCTAAGGATTGGGATTCTGCATTAGCTATTCCTGAAGTTGGAAGAAATAGAGGTCAACATCCACATGTGTATAGGGTTCCTCCTAAACAGAGGAGGGCTCTTGGCTCTGGTTCAACTGAAACTTTGAAGGACCATATGAAGTCCTCTGCAACTAATGGTAAAATGCAGCAGTGGTTCCGTGAAGGCCTTGCAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAGGTTTTCCAGTTTGATGTTTCTCCTACTCCTGGAGCTATAGTTCCTGCAACATCAGTAGCCAATATTTCTACTGAAAGGCATCAGAATGCTACCACTGTCAACAAGAGCAGGAATAGAAGAATCCTCCACAGGCTCCCAGATCCACTTCCTGTGTCCAGTCTGAACTTAACTGAAGAACGTGCAAGAAATTCGCAGAAAGACCACCTCCATGGCAATAAATCATCAATGGTGGTTTCAGTGCTTGTTGATCCCAAAGAGGCAGGAGATGGTGATGTTGATGGCATGATGGCTCCAAAGTCGCTCTCTCGGATTTTCGTGGTTGTGCTTATGGATAGTGTCAAGTATGTCACTTACTCATGTGGTCTTCCGCGTGCTTCTCCCCCACTCTGGTGA 2319 0.47 MPEPTLDPHPPEPPQASDVAFDEFSAEFQNLPIPSMDSLFHNDNFPSEPFPSDLEEFAMDFGENGDFDITFDDFDAFCIPSDAEDFLLPDACNPTGASISPLIDDRDDSSAKNSDYGVVNFDSLESGASAVSGDRSSGVSRFLNSESVSADNLCKQDSPSSGDVKVSSCPSPEFEHCDREESSNGSVSSQGSGNGGSGVYEAMNSPSPDSGRYERDISSSHAHAVQDKDIKLEENGKGCDLKRKKEHSEGSAENRTAKYRKSSSVENKIQQQSQSGVNDLDDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITDLSSKISYVMAENATLRQQLGAGVMCPPPPPAPGMYPHPPMPPMPYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQSASASKSKKSESKKTEVKTKKVASISLLGLFFFIMLFGGLVPLVDVNFGGLVDNFPGRSSYVSDKFYGQGGGKVWPVNGHKNGSERFSISDRVNYDRGRKLEQTHEQQDPHRSNSSEPLTASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTAKAKKDKSETGLAIPKDWDSALAIPEVGRNRGQHPHVYRVPPKQRRALGSGSTETLKDHMKSSATNGKMQQWFREGLAGPMLSSGMCTEVFQFDVSPTPGAIVPATSVANISTERHQNATTVNKSRNRRILHRLPDPLPVSSLNLTEERARNSQKDHLHGNKSSMVVSVLVDPKEAGDGDVDGMMAPKSLSRIFVVVLMDSVKYVTYSCGLPRASPPLW. 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03186 772 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 344 IPR004827 GO:0003700|GO:0006355
Seca1g03186 772 MobiDBLite consensus disorder prediction 214 262 - -
Seca1g03186 772 Pfam bZIP transcription factor 285 344 IPR004827 GO:0003700|GO:0006355
Seca1g03186 772 SUPERFAMILY Leucine zipper domain 286 344 IPR046347 GO:0003700|GO:0006355
Seca1g03186 772 SMART brlzneu 282 346 IPR004827 GO:0003700|GO:0006355
Seca1g03186 772 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 62 770 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 148 167 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 279 302 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 500 520 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 97 117 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 148 302 - -
Seca1g03186 772 Coils Coil 309 329 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 394 415 - -
Seca1g03186 772 Gene3D - 281 346 - -
Seca1g03186 772 CDD bZIP_HY5-like 287 338 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 183 204 - -
Seca1g03186 772 FunFam bZIP transcription factor 49 285 347 - -
Seca1g03186 772 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03186 Seca-Chr1 89160852 89164220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03186 26 770 bZIP Transcription Factor Family AT2G40950 48.695 2.88e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g03186 bZIP_1 1.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03186 K25783 - gmx:100101871 953.355