Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03184 ATGAGGGAGGACGATTCGAATTGGTTTTCAAGATGGGAAGAGGAACTCCCTTCCCCAGAGGAACTCATGCCCTTATCTCAAACCCTAATCACCCCTGATCTAGCCATGGCCTTTGACATCAGAAACCCACGCACAACCACCATCACCACCACACCACAACAGCAACAACAACAGCAGCAGCAGCAGCAACCCCTCCCACCTTCCAACCCTTCATCCCTCCCTTCCTCTGCTGATTTCGCTGATTCCGGCGAACTGGGGTCCGGCACCGCCGGCGAGGAACCGGCCCGCACACTCAAAAGGCCACGCCTTGTGTGGACCCCACAACTCCACAAGCGCTTCGTTGACGCCGTGGCACACCTTGGAATCAAAAACGCGGTTCCAAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCAGGGAAAACGTCGCTAGCCACCTGCAAAAATACCGCCTTTATCTGAAACGCATGCAGGGCATTTCCGCCGCTGGACCCGCCGGCGCCGGCGCCGGAGCTGGCCCTGCTGTTGCCGCTGACCCCGCCACCGACCACCTCTTCGCCAGCTCCCCTGTTCCGCCGCACTTCTTGCATCCTGCGGCCGCTGCGCGGCCTAATTCCGATCACTTCTTGCCGTTTGTGCCTGTCCCCACCGCCCTCCACCACCATCAGCAGCAGCTGGCGGCGGCACAGTTTCACCGGCCGGTGGGGCATTTTGGGTCGCCGCCAAATGGCCACTTTGAGAATCCCTTCCTGTCTAGGCAGCAGCATCAGCAACAGCAGCTTCATAGAATGGGGGCACCAGTGCACAACCCTGTACCTGGTTATGTGGAGGACATGGAATCAGCCAATGCAGCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCCACTGGAGATGATTGA 903 0.5814 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPRTTTITTTPQQQQQQQQQQQPLPPSNPSSLPSSADFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPAGAGAGAGPAVAADPATDHLFASSPVPPHFLHPAAAARPNSDHFLPFVPVPTALHHHQQQLAAAQFHRPVGHFGSPPNGHFENPFLSRQQHQQQQLHRMGAPVHNPVPGYVEDMESANAAGGRKVLTLFPTGDD. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03184 300 FunFam Two-component response regulator 96 159 - -
Seca1g03184 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 266 IPR044841 GO:0003700|GO:0006355
Seca1g03184 300 Pfam Myb-like DNA-binding domain 104 152 IPR001005 -
Seca1g03184 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 153 IPR006447 GO:0003677
Seca1g03184 300 MobiDBLite consensus disorder prediction 1 18 - -
Seca1g03184 300 Gene3D - 97 159 - -
Seca1g03184 300 SUPERFAMILY Homeodomain-like 97 157 IPR009057 -
Seca1g03184 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 156 IPR017930 -
Seca1g03184 300 MobiDBLite consensus disorder prediction 42 78 - -
Seca1g03184 300 MobiDBLite consensus disorder prediction 39 99 - -
Seca1g03184 300 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03184 Seca-Chr1 89074637 89075539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03184 1 300 G2-like Transcription Factor Family AT3G10760 57.143 1.21e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g03184 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03184 - - ccaj:109802866 415.231