Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03178 ATGGCTTCAAGACCCATTGTTCCACAACAGCCCAGAGGTGACGCAGCCTTGGGGGCAGGGAAGCAGCAGAAGAAGAACGGTGCAGCAGATGGAAGGAATCGTAAAGCACTTGGTGATATTGGAAACTTGGTCACTGTAAGAGGAGTTGAGGTCAAGCCTAATCGTCCCATCACAAGGAGTTTCTGTGCCCAACTACTTGCCAATGCACAAGCTGCAGCTGCTGCTGAAAATAACAAGAAACAGGCTTGTCCCAATGTGGCTGGGCCTCCTCCTGTTGTTGAAGGAGTTGCAGTGGCTAAAAGAGTGGCCCCCAAACCAGTTCAGAAGAAAGTCACCACAAAACCAAAGCCTGAGGAAGTCATTGAAATAAGTCCAGACGAAGAGGTCCACAAAGACAAGGCTGTGAATAATAAGAAAAAGGAAGGTGATGCCAACTCCAAGAAGAATTCACACACTTATTCTTCTGTGCTCACAGCTCGAAGCAAGGTAGCATGTGGTCTGACTAATAAACCTAAAGAGATTATTGACATTGATGCTGCTGACACTGACAATGAGCTTGCTGCTGTGGAATATATTGAAGACATTTACAAATTCTATAAAATGGTTGAGAATGAAAGCCGTCCCCATGACTACATGGACTCACAACCTGAGATCAATGAGAGGATGAGAGCTATACTTATTGATTGGCTGATAGATGTACACAGCAAATTTGACCTTTCACTTGAAACCCTTTATTTGACCATCAACATAGTTGATAGGTTCCTAGCAGTTAAGACTGTGCCAAGAAGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCCCCAGAGGTTAATGACTTTGTCTGCCTCTCAGACAGAGCTTACACTCATGAACAGATACTTTTCATGGAGAAAATCATATTGGGGAAGCTAGAATGGACCTTGACTGTGCCTACCCCTTTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAGTGCCAGATGAGGCATTGGAAAACATGACACATTTCCTTTCTGAATTGGGGATGATGCATTATGCCACCTTAATGTATTGTCCATCAATGGTTGCTGCCTCAGCAGTCTATGCTGCAAGATGCACTCTGAATAAGAGCCCTGTTTGGAATGAGACACTTAAGCAGCACACTGGTTACTCTGAAGAACAACTTATGGATTGTGCTAGACTACTGGTGAGCTTGCACTCCACAGTTGGGAATGGGAAGCTTAAGGTTGTCTATAGAAAGTACTCTGATCCTGAGAGAGGATCTGTTGCAGTGCTTCCACCGGCTAAAAATCTTCTGTCTGAAGGGAAGAGCCTCTAA 1347 0.4462 MASRPIVPQQPRGDAALGAGKQQKKNGAADGRNRKALGDIGNLVTVRGVEVKPNRPITRSFCAQLLANAQAAAAAENNKKQACPNVAGPPPVVEGVAVAKRVAPKPVQKKVTTKPKPEEVIEISPDEEVHKDKAVNNKKKEGDANSKKNSHTYSSVLTARSKVACGLTNKPKEIIDIDAADTDNELAAVEYIEDIYKFYKMVENESRPHDYMDSQPEINERMRAILIDWLIDVHSKFDLSLETLYLTINIVDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEQILFMEKIILGKLEWTLTVPTPFVFLVRFIKASVPDEALENMTHFLSELGMMHYATLMYCPSMVAASAVYAARCTLNKSPVWNETLKQHTGYSEEQLMDCARLLVSLHSTVGNGKLKVVYRKYSDPERGSVAVLPPAKNLLSEGKSL. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03178 448 FunFam G2/mitotic-specific cyclin-1 315 433 - -
Seca1g03178 448 SMART Cyclin_C_2 321 438 IPR004367 -
Seca1g03178 448 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Seca1g03178 448 CDD CYCLIN_AtCycB-like_rpt1 174 316 - -
Seca1g03178 448 Gene3D - 194 433 - -
Seca1g03178 448 FunFam G2/mitotic-specific cyclin 207 314 - -
Seca1g03178 448 Pfam Cyclin, N-terminal domain 194 318 IPR006671 -
Seca1g03178 448 MobiDBLite consensus disorder prediction 124 152 - -
Seca1g03178 448 MobiDBLite consensus disorder prediction 124 147 - -
Seca1g03178 448 SMART cyclin_7 228 312 IPR013763 -
Seca1g03178 448 SMART cyclin_7 325 407 IPR013763 -
Seca1g03178 448 PANTHER CYCLINS 141 426 IPR039361 -
Seca1g03178 448 SUPERFAMILY Cyclin-like 183 318 IPR036915 -
Seca1g03178 448 PIRSF Cyclin_A_B_D_E 1 448 IPR046965 GO:0016538|GO:0044772
Seca1g03178 448 Gene3D - 208 319 - -
Seca1g03178 448 Pfam Cyclin, C-terminal domain 321 437 IPR004367 -
Seca1g03178 448 SUPERFAMILY Cyclin-like 320 439 IPR036915 -
Seca1g03178 448 CDD CYCLIN_AtCycB-like_rpt2 321 437 - -
Seca1g03178 448 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03178 Seca-Chr1 88785774 88788089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03178 1 447 Core Cell Cycle Gene Families AT4G37490 54.506 2.17e-153 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03178 K21777 - gmx:547919 664.455