Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03161 ATGGCATTTGAATTCTACAATGCTTATGCACAAAAGAGGAGGTTTGCGAGTAGAAAGTGCAACGTAGTAAAAAACAAGTGTGGGGATATTACTCAACAAACCTTTGTTTGTTACAAGCAAGGTTACAGGCAGTCTAAACATTTGAAAAGGCTTAACCGAAAGAGGGAACCTAGAGCATTAACAAGGTGTGGTTGTAATGCCTTTTTTCGTGTACGGATTGTAGTAGAGACTGGGAGGTGGCATGTCAAAGCTCTTTCATATGATCACGGTCATGAGATGTTAGCACAACAATTTGTTGGGATGTTGCCTACACATAAGAAGACGGATGAATCTGAGCTGATGCAGATGAATGGTATGAGAGATGCTGGTATTGGTGTGACACAAATATATGGTTTAGCTTCTAATCAGTCAGGGGGTATGATAGGTTGGCATTTAGAAAGCGAGATATGTATAATGAAATTGATAAACAAAGGCGCTTGCTAG 483 0.3996 MAFEFYNAYAQKRRFASRKCNVVKNKCGDITQQTFVCYKQGYRQSKHLKRLNRKREPRALTRCGCNAFFRVRIVVETGRWHVKALSYDHGHEMLAQQFVGMLPTHKKTDESELMQMNGMRDAGIGVTQIYGLASNQSGGMIGWHLESEICIMKLINKGAC. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03161 160 Pfam FAR1 DNA-binding domain 4 94 IPR004330 -
Seca1g03161 160 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03161 Seca-Chr1 88527786 88528268 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03161 FAR1 2.7e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03161 - - mtr:112420123 140.969