Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03160 ATGACCATGAAGTCTGGGTCACTGGATGAGTGGAGGAATTACTTTAGGACTGCGAATTGTGATATATTCGATATAATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTCAAGGAGGGATGGGATTGCTGAGAGGTTGTTCTCTTCAAGGTTGACTCGTTGTTTAGGGTGTGACAGGGTGGAGTTAGCTGTGTCTGGGGATGGTGGTAATGATGGTGGTGATAATGATGATGGAGGTTGCAAGAGTGGTTTTGATAGAGATGGGGCTGAGGTTGAAGCTGGGGTAAGCAAAGAGAGCAAGGTCAATTGTAGTAGAGCTGATGATCATGGAGATATGGACATCAACCGGATTAGCAATTATAGTTTTGGAGAAGCTGAAGCTTTGACTGATGAGATTGAACAAGAGTCTCAGTTTGTTGGGGAAGTTTTGAGGATCAAAGACATTCTGCATAATCGTGAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTTCAGCTGATGGAACTCAGTGTAGATTGTCTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAACGATGTTCGTCAACTCGCACGGACTCTTATCGATGGCTGGAAAGTAATGGTAGATGAGTGGGTCACGGCTACAACTAAAGCAGCTAATGCAGCTTCAGAAGGCACACCGGATTCAGTGAATCCATCTGTTGTCGATGATGAAGAAGAAATAGGACTTCCATCACCTCCTTTGGATGAAGGGGCTTTCTTTGTAGCTACAACTGGTTCAATAGAACTCTCACAATTCTTCGATGGCATGGATGATGATGGAAGTGAGTTGAATTTGCATTTTCTTGTGCTTTGTCTAGCTAGCTTTCGCTATCCTCGACAGAGTGGGCAATTCAACAAGAACCGTGACAATGGCAGAAAGCCGGCTTTGGACAATCAAGTTATAGAAAAAAGGAAGTTTCAGGCTTCCAATGACACAACCATCACTGCTAAGGACAATAAGAGTCAGCAACCAAAGAAAGTTGAGGCTGCAGTGAGGCTAAATAAGCCGGTAACCGCAGATTCTGGCCCTGCCAGACTACCAAAATCAAATATGCAGAGAAAAAGCAATGTGGAGCCAAAGATGCAGCAAAAAGTAGAGAACAATACAATCACAAAGAGGACTCCAATTACTCAGCAAGATAAATCCAAGTTTTCAGATGATAAGCTGGAAGCCACTAAGAGGAAACTTCAAGAACGTTATCAACAAGCTGAAAATGCTAAGAGACAACGAACTATCCAGGTTATGGAGATTAATGATCTTCCTAAACAAGGGATTGTACACCGGAATCCCCATTTTAAACCTGGACATAATAGGCAATGGGCAAGGAGATAG 1404 0.4359 MTMKSGSLDEWRNYFRTANCDIFDIIDHAIMVAASDCPKEFRSRRDGIAERLFSSRLTRCLGCDRVELAVSGDGGNDGGDNDDGGCKSGFDRDGAEVEAGVSKESKVNCSRADDHGDMDINRISNYSFGEAEALTDEIEQESQFVGEVLRIKDILHNREEESDSVLFESLRRLQLMELSVDCLKATEIGKAVNPLRKHGSNDVRQLARTLIDGWKVMVDEWVTATTKAANAASEGTPDSVNPSVVDDEEEIGLPSPPLDEGAFFVATTGSIELSQFFDGMDDDGSELNLHFLVLCLASFRYPRQSGQFNKNRDNGRKPALDNQVIEKRKFQASNDTTITAKDNKSQQPKKVEAAVRLNKPVTADSGPARLPKSNMQRKSNVEPKMQQKVENNTITKRTPITQQDKSKFSDDKLEATKRKLQERYQQAENAKRQRTIQVMEINDLPKQGIVHRNPHFKPGHNRQWARR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03160 467 Coils Coil 410 437 - -
Seca1g03160 467 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Seca1g03160 467 CDD TFIIS_I 147 219 - -
Seca1g03160 467 SMART TFS2_5 145 220 IPR003617 GO:0005634
Seca1g03160 467 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 458 IPR044805 -
Seca1g03160 467 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 137 235 IPR035441 -
Seca1g03160 467 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Seca1g03160 467 MobiDBLite consensus disorder prediction 228 249 - -
Seca1g03160 467 MobiDBLite consensus disorder prediction 447 467 - -
Seca1g03160 467 MobiDBLite consensus disorder prediction 453 467 - -
Seca1g03160 467 MobiDBLite consensus disorder prediction 372 402 - -
Seca1g03160 467 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 230 IPR035441 -
Seca1g03160 467 MobiDBLite consensus disorder prediction 360 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03160 Seca-Chr1 88492430 88496851 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca1g03160 Med26 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03160 - - gmx:100799367 620.157