Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g03160 | ATGACCATGAAGTCTGGGTCACTGGATGAGTGGAGGAATTACTTTAGGACTGCGAATTGTGATATATTCGATATAATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTCAAGGAGGGATGGGATTGCTGAGAGGTTGTTCTCTTCAAGGTTGACTCGTTGTTTAGGGTGTGACAGGGTGGAGTTAGCTGTGTCTGGGGATGGTGGTAATGATGGTGGTGATAATGATGATGGAGGTTGCAAGAGTGGTTTTGATAGAGATGGGGCTGAGGTTGAAGCTGGGGTAAGCAAAGAGAGCAAGGTCAATTGTAGTAGAGCTGATGATCATGGAGATATGGACATCAACCGGATTAGCAATTATAGTTTTGGAGAAGCTGAAGCTTTGACTGATGAGATTGAACAAGAGTCTCAGTTTGTTGGGGAAGTTTTGAGGATCAAAGACATTCTGCATAATCGTGAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTTCAGCTGATGGAACTCAGTGTAGATTGTCTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAACGATGTTCGTCAACTCGCACGGACTCTTATCGATGGCTGGAAAGTAATGGTAGATGAGTGGGTCACGGCTACAACTAAAGCAGCTAATGCAGCTTCAGAAGGCACACCGGATTCAGTGAATCCATCTGTTGTCGATGATGAAGAAGAAATAGGACTTCCATCACCTCCTTTGGATGAAGGGGCTTTCTTTGTAGCTACAACTGGTTCAATAGAACTCTCACAATTCTTCGATGGCATGGATGATGATGGAAGTGAGTTGAATTTGCATTTTCTTGTGCTTTGTCTAGCTAGCTTTCGCTATCCTCGACAGAGTGGGCAATTCAACAAGAACCGTGACAATGGCAGAAAGCCGGCTTTGGACAATCAAGTTATAGAAAAAAGGAAGTTTCAGGCTTCCAATGACACAACCATCACTGCTAAGGACAATAAGAGTCAGCAACCAAAGAAAGTTGAGGCTGCAGTGAGGCTAAATAAGCCGGTAACCGCAGATTCTGGCCCTGCCAGACTACCAAAATCAAATATGCAGAGAAAAAGCAATGTGGAGCCAAAGATGCAGCAAAAAGTAGAGAACAATACAATCACAAAGAGGACTCCAATTACTCAGCAAGATAAATCCAAGTTTTCAGATGATAAGCTGGAAGCCACTAAGAGGAAACTTCAAGAACGTTATCAACAAGCTGAAAATGCTAAGAGACAACGAACTATCCAGGTTATGGAGATTAATGATCTTCCTAAACAAGGGATTGTACACCGGAATCCCCATTTTAAACCTGGACATAATAGGCAATGGGCAAGGAGATAG | 1404 | 0.4359 | MTMKSGSLDEWRNYFRTANCDIFDIIDHAIMVAASDCPKEFRSRRDGIAERLFSSRLTRCLGCDRVELAVSGDGGNDGGDNDDGGCKSGFDRDGAEVEAGVSKESKVNCSRADDHGDMDINRISNYSFGEAEALTDEIEQESQFVGEVLRIKDILHNREEESDSVLFESLRRLQLMELSVDCLKATEIGKAVNPLRKHGSNDVRQLARTLIDGWKVMVDEWVTATTKAANAASEGTPDSVNPSVVDDEEEIGLPSPPLDEGAFFVATTGSIELSQFFDGMDDDGSELNLHFLVLCLASFRYPRQSGQFNKNRDNGRKPALDNQVIEKRKFQASNDTTITAKDNKSQQPKKVEAAVRLNKPVTADSGPARLPKSNMQRKSNVEPKMQQKVENNTITKRTPITQQDKSKFSDDKLEATKRKLQERYQQAENAKRQRTIQVMEINDLPKQGIVHRNPHFKPGHNRQWARR. | 468 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g03160 | 467 | Coils | Coil | 410 | 437 | - | - | |
Seca1g03160 | 467 | Pfam | TFIIS helical bundle-like domain | 170 | 218 | IPR017923 | - | |
Seca1g03160 | 467 | CDD | TFIIS_I | 147 | 219 | - | - | |
Seca1g03160 | 467 | SMART | TFS2_5 | 145 | 220 | IPR003617 | GO:0005634 | |
Seca1g03160 | 467 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED | 3 | 458 | IPR044805 | - | |
Seca1g03160 | 467 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 137 | 235 | IPR035441 | - | |
Seca1g03160 | 467 | ProSiteProfiles | TFIIS N-terminal domain profile. | 146 | 221 | IPR017923 | - | |
Seca1g03160 | 467 | MobiDBLite | consensus disorder prediction | 228 | 249 | - | - | |
Seca1g03160 | 467 | MobiDBLite | consensus disorder prediction | 447 | 467 | - | - | |
Seca1g03160 | 467 | MobiDBLite | consensus disorder prediction | 453 | 467 | - | - | |
Seca1g03160 | 467 | MobiDBLite | consensus disorder prediction | 372 | 402 | - | - | |
Seca1g03160 | 467 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 144 | 230 | IPR035441 | - | |
Seca1g03160 | 467 | MobiDBLite | consensus disorder prediction | 360 | 407 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g03160 | Seca-Chr1 | 88492430 | 88496851 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Seca1g03160 | Med26 | 4.1e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g03160 | - | - | gmx:100799367 | 620.157 |