Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03146 ATGGCATCCAGCTCAATGTCAGCCTCTGGCTCATGGAGTGTTAAGGACAATAAAGCCTTTGAAAAGGCTCTAGCTGTTTATGACAAGGACACCCCAGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGGAAAACTCCAGAGGAAGTGAAGAGGCACTATGAGCTCCTTGTCCGGGATGTTAAGCATATTGAGTCAGGGCAAGTGCCATTCCCAAATTACAAGAAAACTGGAGTCTCTGAAGATCATAAGGAGAAAAGGGCTGAAGAACCTGAATCTCCAGTAACACACAACTGCCATCAACAACAACACAGATTTTCTAATTTTCATCAACCAACAACTTTTCCAGTATCCGGTAGTAGTACTACATGGTGTTATGTTATGTCATACAGTGCTATTGAAATAGCATTAGACTATTAG 420 0.4286 MASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVRDVKHIESGQVPFPNYKKTGVSEDHKEKRAEEPESPVTHNCHQQQHRFSNFHQPTTFPVSGSSTTWCYVMSYSAIEIALDY. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03146 139 CDD SANT 18 58 IPR001005 -
Seca1g03146 139 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Seca1g03146 139 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 90 IPR044636 GO:0003700
Seca1g03146 139 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Seca1g03146 139 SMART sant 8 60 IPR001005 -
Seca1g03146 139 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Seca1g03146 139 MobiDBLite consensus disorder prediction 69 105 - -
Seca1g03146 139 FunFam Transcription factor SRM1 4 71 - -
Seca1g03146 139 MobiDBLite consensus disorder prediction 77 94 - -
Seca1g03146 139 Gene3D - 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03146 Seca-Chr1 86866910 86867765 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g03146 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03146 - - gmx:100818368 158.303