Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03134 ATGGACAACCCTGACCTTTTCCAATTCCTCACCGCCACCAACAACAACACCATGATGCAACACAGCTTCTGTAGTTCTTCCAATTATTACCCCTTGGAACTCTCCGAAATTACCGATACACCCTCCCACCATGATAGGGCTCTCGCTGCTATGAGAAACCACAAGGAAGCTGAGAAGCGAAGAAGAGAGAGAATCAATTCCCACCTTGACCACCTTCGCACTCTCCTTCCTTGCAATTCCAAGACAGATAAGGCTTCACTTCTTGCGAAAGTGGTTCAGCGTGTTAAGGAGCTGAAGCAGCAAACCTCTGAAATCACTGAACTCGAAACGGTTCCTTCAGAAACCGATGAAATCACCGTCCTCTCCATCAGCGGCGACCATGCCGGCGGTGATGGGAGGCTCATATTCAAGGCTTCTTTGTGCTGTGAGGACCGTTCTGATCTCATCACTGACATCATAGAAATCCTCAAGTCTCTTCATCTGAAAACTCTCAAAGCTGAAATGGCCACGCTTGGAGGAAGGACTCGTAACGTTCTGGTGGTTGCTGCTGATAAAGAACACAGCATTGAATCAATCCATTTCCTTCAGAACTCACTCAAATCCTTGATAGATCGAAACAATTCCAGTGACAGGTCAAAACGACGCCGTGGGTTAGATCGAAGAATGATGGCTTAG 675 0.4726 MDNPDLFQFLTATNNNTMMQHSFCSSSNYYPLELSEITDTPSHHDRALAAMRNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSISGDHAGGDGRLIFKASLCCEDRSDLITDIIEILKSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLIDRNNSSDRSKRRRGLDRRMMA. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03134 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 106 IPR036638 GO:0046983
Seca1g03134 224 PANTHER TRANSCRIPTION FACTOR BHLH30 26 217 IPR045847 GO:0003700|GO:0006355
Seca1g03134 224 SMART finulus 55 104 IPR011598 GO:0046983
Seca1g03134 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Seca1g03134 224 Pfam Helix-loop-helix DNA-binding domain 53 98 IPR011598 GO:0046983
Seca1g03134 224 CDD bHLH_AtAIG1_like 45 120 - -
Seca1g03134 224 MobiDBLite consensus disorder prediction 206 224 - -
Seca1g03134 224 FunFam transcription factor bHLH30 44 107 - -
Seca1g03134 224 MobiDBLite consensus disorder prediction 205 224 - -
Seca1g03134 224 Gene3D - 44 110 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03134 Seca-Chr1 86636000 86638057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03134 9 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.942 8.03e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g03134 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03134 - - gmx:100802566 321.242