Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03128 ATGGGACTCTGTCATGGAAAACCCATTGAAACCTCACACACAGAAGGAGAAAACTCAGTTTTCCCAAGTAACAAACAGGTATTGTCACTACCACCAAGTTCCCACACCACCAAATCACCATCAAAGTTTCCATTTTTCAGCCCTAGTCCCTTGCCAAACCTCTTCAAGAACTCACCAGCGAACTCTAGTGTGAGCTCAACCCCTCTGCGCATCTTCAAGCGTCCCTTTCCTCCTCCTTCGCCGGCCAAGCACATTCGGGCCTTGCTGGCCCGGCGCCATGGCTCAGTGAAGCCCAATGAGGCCACCATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTTGGGTTCTCAAAGCACTTCACGGCTCATTATGAGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGATACACTTGCTCTGCCAAGGGAAAGAAAGGCAGTTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTGGTGCAGTTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGCGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTTACTTCTGAAGATGAGAATTCCACGCTGAAGGCCATTGATTTTGGACTGTCTGACTATGTAAAACCAGAGGAGAGGTTGAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCATATATTCTTTTATGTGGAAGTCGACCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCACCTGATGCAAAAGATTTTGTAAAGAGGCTGTTGAATAAGGATTTTCGTAAAAGACTAACAGCAGCTCAGGCTCTCGGTCATCCATGGCTGGCGAATCACTCTGATGATATGAAGATACCATTTGATATGATAATCCACAAGCTTGTTAAAACTTACATATGCTCATCTTCTTTACGCAAATCAGCGTTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGTTAGCATATCTTAAAGAACAATTTACTCTGTTAGGGCCAAACAAAAATGGGCTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACTGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGATTAGTTCAATCCAATACCGGAAATTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGACAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGGCCAATCATGATTGAAGAGCTTGCCTCAGTACTCTTCTTGTTCAATACCATTTTGTCTAATGAACTACTATATTTTGATTGTGATTTTATTTTGTTTTAA 1680 0.428 MGLCHGKPIETSHTEGENSVFPSNKQVLSLPPSSHTTKSPSKFPFFSPSPLPNLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFTAHYELGQEVGRGHFGYTCSAKGKKGSFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFTSEDENSTLKAIDFGLSDYVKPEERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPDAKDFVKRLLNKDFRKRLTAAQALGHPWLANHSDDMKIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLKEQFTLLGPNKNGLISMQNFKTAILRSATDASKDSRVLDYVNMISSIQYRKLDFEEFCAAAISVHQLEGMDSWEQHARRAYELFEKDGNRPIMIEELASVLFLFNTILSNELLYFDCDFILF. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03128 559 FunFam CDPK-related kinase 1 427 499 - -
Seca1g03128 559 Gene3D - 430 499 - -
Seca1g03128 559 SUPERFAMILY EF-hand 419 549 IPR011992 -
Seca1g03128 559 FunFam CDPK-related kinase 3 119 291 - -
Seca1g03128 559 Gene3D Phosphorylase Kinase; domain 1 120 216 - -
Seca1g03128 559 ProSiteProfiles Protein kinase domain profile. 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03128 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Seca1g03128 559 Gene3D - 411 539 - -
Seca1g03128 559 FunFam Calcium-dependent protein kinase SK5 299 396 - -
Seca1g03128 559 FunFam CDPK-related kinase 1 120 215 - -
Seca1g03128 559 Pfam Protein kinase domain 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03128 559 MobiDBLite consensus disorder prediction 13 42 - -
Seca1g03128 559 SUPERFAMILY Protein kinase-like (PK-like) 116 418 IPR011009 -
Seca1g03128 559 SMART serkin_6 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03128 559 CDD STKc_CAMK 126 388 - -
Seca1g03128 559 MobiDBLite consensus disorder prediction 1 42 - -
Seca1g03128 559 ProSitePatterns Protein kinases ATP-binding region signature. 133 159 IPR017441 GO:0005524
Seca1g03128 559 PANTHER SERINE/THREONINE-PROTEIN KINASE 113 536 - -
Seca1g03128 559 Gene3D Transferase(Phosphotransferase) domain 1 217 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03128 Seca-Chr1 86515904 86521482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03128 1 551 EF-hand Containing Proteins AT3G50530 64.511 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g03128 Pkinase 5.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03128 - - gmx:100803625 948.347