Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03124 ATGCCTTACCTTGTCCGCGAAAACCTATTCATCGGCAACATCGGCGACGCGGCGGAGATTCTCCAAAACGCCACCGTTCAGCACCGTGTGACGCACATCCTCTCCGTTCTCAGCTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGAACCGGCCTATCAATCCCCGCCAAGGAGATCGCCAAGGTCCACGCCGGTGAAGTTGCCGCCAAGAGCGCGCTCTCGCCGGAGAAGCTTCTCTACTCGCTCGAGTACGCCGGCAATGACTTGAAGCTCGTGAGGATGGCCGTTCCCCTCAAGGACACCGAGAACGAGGACTTGTTGGATTATCTCGAAGTTTGCATCGATTTCATTGATCGTAGCAGGAAGGAAGGTGGTTCCGTTTTGGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACTGCGTATTTGATGAGAACCGAACGTCTATCACAAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAATCTAGCCCTTTATACAAGCGCTTTCGTCTAAAAATATTAGGTGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGGGCAGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGTGCAAGAAGCTACTAAAGTAGAAAGTAATAATCGTCGCCCTACATATCGCTGTAAGAAGTGCCGACGGATTGTTGCATTGCAAGAACATGTGGTAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGGGTGGCATAAGCGGAGAAGTGGTAACCCTTTTAACAAGTCTAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTGCGATGGATGAAAGCTGGTAAGAAAACATTGAATTACAATATTAACATGTCTCTATATTTCCCAACGAGCTGTGACTTTACATTGCACATTTGTCCAAAATGTTTTCATAATATGTGTAAGAGATTAAGAGTGTTTTTTAATAACATTTTGAAGTGTATATTACCAATTTTTTGTTGCCATGCCCTCTTGGAGCATTACTGGATAATTTTTCTTGACTACATTCATTTCCATAGATTGTTCTATACATATAGGGTTCTTTGGTGA 1167 0.449 MPYLVRENLFIGNIGDAAEILQNATVQHRVTHILSVLSSASISFFSEWRTGLSIPAKEIAKVHAGEVAAKSALSPEKLLYSLEYAGNDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRSRKEGGSVLVHCFAGVSRSAAVITAYLMRTERLSQEDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPLYKRFRLKILGENHFSGLRIDSSKLGADPGMPVEISSEVQEATKVESNNRRPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRRSGNPFNKSNESECSSIFIEPLRWMKAGKKTLNYNINMSLYFPTSCDFTLHICPKCFHNMCKRLRVFFNNILKCILPIFCCHALLEHYWIIFLDYIHFHRLFYTYRVLW. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03124 388 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 187 IPR020422 GO:0006470|GO:0008138
Seca1g03124 388 CDD DSP_DUSP12 4 189 - -
Seca1g03124 388 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 187 IPR029021 -
Seca1g03124 388 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 306 - -
Seca1g03124 388 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 163 IPR000387 GO:0016311|GO:0016791
Seca1g03124 388 Gene3D Protein tyrosine phosphatase superfamily 4 204 IPR029021 -
Seca1g03124 388 Pfam Dual specificity phosphatase, catalytic domain 91 183 IPR000340 GO:0008138|GO:0016311
Seca1g03124 388 SMART dsp_5 1 184 IPR020422 GO:0006470|GO:0008138
Seca1g03124 388 FunFam Dual specificity protein phosphatase 12-like 4 204 - -
Seca1g03124 388 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03124 Seca-Chr1 86470257 86473495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03124 91 183 Protein tyrosine phosphatase (PTP) family AT3G06110 38.710 4.57e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03124 K14819 - gmx:100804683 511.531