Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03105 ATGGCTCCCAATTCGCCTTCAAGAAAAGAGTTCAATCCCACAGACGATCAACTCCTCCGATTGTTCCTCTACAACAAGATCCACGGGAAACCTTTACCCAGCAATGTTATCATTCACGAATGTGATTTGTACGGTGATAAAAACCCTTGGGAGATTTGGCAACAATTTGGAGATGGTTCCCACTCATACGGTGGTGGAAAGGATCTCTATTTCTTCACCACACTAAAGAAAAAGTCTCCATCTAGGAGCTCACGTAGTCGACGCTCGGTTCGCACCATTGGCTGTGGTTCTTGGGAAGGTGAAGACACAGGCAAAATCATTGTGGCTAGTGGCACCAACCAACTCCTCGGTATCAAGAAACGGTACCGTTTTGAAAAGAGTGGCACTGACCACGATGGTGGGTGGATCTTGCATGAATACAGCCTTGGCCCATCGATGCTAAGCAATCCTCATGCAATTAATTGGGTTCTATGCAGATTTAGAAAGAATTTGAAAAATGAGAGCGTCATAAGACAAAGGAAGACCATTGTTCTTGCACTTGCTTCTGCTACCGCTGAATCTGAGAATAATAATGTTCGGCTTGGGGAAGATATTTTCCTCCGAGGACCAAGAAACTATCTAGAGAGTGGAGTTAACAGAACCAGGGTGGTTGAAACTACCACTAAAAGCAAGTCTGAATATAAGGAAGAGTATGTTAATGTCACTATGTTTGGGCCGGAGTCATTTTCCATGGAGTTGAGAGAGTTTGAAGGATGTTTGATCCAAGAGGAAGACATTCCCTTGCTTCCTAATCCATTTTACTTGGACCTATTGTTGGAAATGATTGATATTAAGTACATCAAAAGTAGTAGTAAGTAG 858 0.4301 MAPNSPSRKEFNPTDDQLLRLFLYNKIHGKPLPSNVIIHECDLYGDKNPWEIWQQFGDGSHSYGGGKDLYFFTTLKKKSPSRSSRSRRSVRTIGCGSWEGEDTGKIIVASGTNQLLGIKKRYRFEKSGTDHDGGWILHEYSLGPSMLSNPHAINWVLCRFRKNLKNESVIRQRKTIVLALASATAESENNNVRLGEDIFLRGPRNYLESGVNRTRVVETTTKSKSEYKEEYVNVTMFGPESFSMELREFEGCLIQEEDIPLLPNPFYLDLLLEMIDIKYIKSSSK. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03105 285 PANTHER NAC TRANSCRIPTION FACTOR 56 10 185 - -
Seca1g03105 285 Pfam No apical meristem (NAM) protein 10 142 IPR003441 GO:0003677|GO:0006355
Seca1g03105 285 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Seca1g03105 285 SUPERFAMILY NAC domain 10 161 IPR036093 GO:0003677|GO:0006355
Seca1g03105 285 ProSiteProfiles NAC domain profile. 5 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03105 Seca-Chr1 86085374 86087419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03105 11 160 NAC Transcription Factor Family AT5G13180 33.750 4.69e-16 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g03105 NAM 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03105 - - mtr:11433340 238.424