Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03096 ATGGGTAGTAGAAGTAGAGCTGTGAACGTTAACACTGAGGATAGTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCACCCTTCTCGAATTTCTGAATTTGGAACCCTTGAACAATCTCTTGGATTTCGCATTGAGGATACCATCAATCTCAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAGCAAGATACAGTCAATTGCAACATCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCCCAGACATTGCCATTACAAAAAGACTCTCAACCAAATCTGGCTTCAACATCCGCTGGCCATCGTGAGAACTGGGGAGAGTCCAACATGGCCGATTCAAGCCCTAGGACTGATACTTCAACAGATGATACAGATGATAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGAGAGGTCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTAGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCTCTGGAGATCAGGCCCATTCAATGAGTGGAAATGGTATTTAA 735 0.4327 MGSRSRAVNVNTEDSNKVVNGMPSYAPPLPSSSSSMGIEATNVHPSRISEFGTLEQSLGFRIEDTINLSRNPVFNQMKSNSQALGADIQFGALSKIQSIATSDINLSAAIAGSQTLPLQKDSQPNLASTSAGHRENWGESNMADSSPRTDTSTDDTDDKNQRPERDESSERSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGI. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03096 244 MobiDBLite consensus disorder prediction 150 191 - -
Seca1g03096 244 MobiDBLite consensus disorder prediction 117 199 - -
Seca1g03096 244 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 221 IPR004827 GO:0003700|GO:0006355
Seca1g03096 244 Coils Coil 198 225 - -
Seca1g03096 244 SMART brlzneu 175 238 IPR004827 GO:0003700|GO:0006355
Seca1g03096 244 MobiDBLite consensus disorder prediction 1 19 - -
Seca1g03096 244 SUPERFAMILY Leucine zipper domain 179 222 IPR046347 GO:0003700|GO:0006355
Seca1g03096 244 PANTHER TRANSCRIPTION FACTOR TGA9 131 237 - -
Seca1g03096 244 FunFam BZIP family transcription factor 178 227 - -
Seca1g03096 244 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 182 197 IPR004827 GO:0003700|GO:0006355
Seca1g03096 244 MobiDBLite consensus disorder prediction 1 33 - -
Seca1g03096 244 Pfam bZIP transcription factor 179 219 IPR004827 GO:0003700|GO:0006355
Seca1g03096 244 Gene3D - 178 230 - -
Seca1g03096 244 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03096 Seca-Chr1 85915883 85919568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03096 142 243 bZIP Transcription Factor Family AT3G12250 76.364 1.20e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g03096 bZIP_1 3.5e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03096 K14431 - gmx:778136 374.4