Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03094 ATGACTAAGGTTGTTTTGGTAGGATCAATAAGCTTTAGTAGAATTTTGTGCAGTGTAGCTTTTGTGGCTCTTTCCTTTTCCTATTCTTATCTGAATGGTGAATACTTTTTATTTTTCTATGACAGAGAGGCCATTGATTCTTTCACAATTGCTGCAGCTCCAAATCTTGGATCAGTTCTACGAGCACCGAGTGTTATTTACTCAAGCTTTGTCGGTCATTCAAAGAGTTACTTAGAACACGATGGAAGGACTCCATTTTTATCTGGTCATGAGGTTAGCAGTCAAATTCAAGAAGGGATCGGGACAAGACAATCAACCTGGTGGGAGAAAGCTTCAATTCAAATGCAAATTCCTGAAGAATTGCCTATTGGTTATGGATGTAGCTTCACTCAAACAATATTTAATGGGATTAATGTGATGGCTGGAGTTGGCCTTCTATCTACACCTTATACGGTGAAACAAGCTGGGTGGGCGAGTATGCTGGTGATGCTTCTTTTTGCAGTTGTTTGTTGTTACACAGCAGACCTTATGAAACACTGCTTTCAAAGCAAAGAAGGGATCAATAGCTACCCTGATATAGGAGAAGCTGCATTTGGAAAATATGGTCGAGTTATTATATCAGTAAGCATATGCTTGGTTATGCAGTCATATTGTGTGGAATTTATCATCTTGGAAGGAGATAACCTTAGTGGGTTGTTTCCTGGAACATCCTTGCATTGGGGAAGTTTGCACTTAGACTCCAAACACTTGTTTGCAGTTTTGACTGCACTTATTATTCTCCCAACTGTTTGGCTGAAGGATCTTCGTATAATCTCATATCTCTCAGCTGGAGGGGTTATTGCTACAACATTGATTACTATGTGTGTGTTTATTGTTGGTACATCAGATGATGTTGGATTCCATCAAACTGGTCCTTTGTTGAATTGGAGTGGGGTTCCGTTTGCTTTTGGTGTCTTTGGGTTTTGCTTTGCAGGACATTCAGTTTTTCCAAATATTTACCAATCTATGGCTGACAAAAGAGAATTTACTAAGGCAGTAGTGACATGTTTTATTTTGTGCGTGTTGATATATGGAAGTGTTGCGGTCATGGGATTTCTCATGTTTGGTGAAGGGACTATGTCTCAGATAACATTGAATCTTCCACTAAATGCATTTGCTTCTAAAGTTGCCTTGTGGACAATAGTAATTAGCCCGTTGACCAAATATGCTTTGATGATGAACCCACTTGCAAGGAGTGTTGAGGAATTGCTTCCTCATAGAATCTCAAGTACAAACTGGTGTTTCATTCTTCTTAGAACAGCACTGGTTATATCCACAGTTTGTGCTGCTTTTCTTATTCCATTTTTTGGGCTCGTGATGGCTTTAATTGGTTCTCTCCTAAGTGTACTTGTGGCAGTGATTTTGCCAGCTTTATGTTTTCTGAAAATTGTGGGGAAAAAAGCAACAAATACACAGGTTGCTCTCAGTGTCATAATTGCTGCCTGGGGAATCACCAGTGCTTTCTTTGGAACATATTCATCTTTATTAAAGATCGTGCAAAAATCTTAA 1548 0.3908 MTKVVLVGSISFSRILCSVAFVALSFSYSYLNGEYFLFFYDREAIDSFTIAAAPNLGSVLRAPSVIYSSFVGHSKSYLEHDGRTPFLSGHEVSSQIQEGIGTRQSTWWEKASIQMQIPEELPIGYGCSFTQTIFNGINVMAGVGLLSTPYTVKQAGWASMLVMLLFAVVCCYTADLMKHCFQSKEGINSYPDIGEAAFGKYGRVIISVSICLVMQSYCVEFIILEGDNLSGLFPGTSLHWGSLHLDSKHLFAVLTALIILPTVWLKDLRIISYLSAGGVIATTLITMCVFIVGTSDDVGFHQTGPLLNWSGVPFAFGVFGFCFAGHSVFPNIYQSMADKREFTKAVVTCFILCVLIYGSVAVMGFLMFGEGTMSQITLNLPLNAFASKVALWTIVISPLTKYALMMNPLARSVEELLPHRISSTNWCFILLRTALVISTVCAAFLIPFFGLVMALIGSLLSVLVAVILPALCFLKIVGKKATNTQVALSVIIAAWGITSAFFGTYSSLLKIVQKS. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03094 515 Pfam Transmembrane amino acid transporter protein 128 507 IPR013057 -
Seca1g03094 515 Gene3D Amino acid/polyamine transporter I 126 512 - -
Seca1g03094 515 PANTHER OS05G0424000 PROTEIN-RELATED 132 496 - -
Seca1g03094 515 FunFam Amino acid transporter AVT1A 125 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03094 Seca-Chr1 85675318 85681648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03094 42 455 Amino Acid or Auxin Permease AAAP Family AT2G41190 64.819 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03094 K15015 - gmx:100790344 685.256