Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03086 ATGTCCCTTGAAGACTCTCTAAGATCTCTATCCCTTGATTACCTCAACCTTCTCATCAATGGACAAGCCTTCAGCGACGTCACTTTCAGTGTCGAAGGTCGTTTAGTCCACGCTCACCGCTGCATCCTCGCAGCACGGAGCCTCTTCTTCAGGAAATTCTTCTGCGGACCTGACCCGCCTTCGGGTCTCGACCCACACGGAACAACACGGGTCAACTCGCCCGTGTCAACCAGGTCCGGTGTCATCCCAGTTAACTCAGTGGGTTACGAGGTGTTCTTGCTGTTGCTTCAGTTTCTGTACAGTGGCCAAGTCTCTATTGTCCCTCAGAAGCATGAGCCTAGGCCTAATTGTGGAGAGCGTGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGATACACTCTCAGCCGCTAGATATTTCGGTGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCAAGCATGGTAGAGAAGGCTTCAATTGAAGATGTAATGAAAGTTCTCTTAGCTTCAAGAAAACAAGACATGCACCAACTATGGACAACTTGTTCCCACTTAGTATCAAAATCCGGTCTTCCCCCAGAAGTTCTAGCCAAACACCTTCCAATTGACATAGTAGCAAAAATAGAAGAGCTTCGTCTCAAATCTTCCTTAGCACGCCGTTCGTTAATCCCACACCACCACCCTCACCATCACCACCACCACCCTCACGACCTCAGCGTCGACCTTGAGGATCAGAAAATCCGGAGAATGAGAAGAGCACTTGACTCCTCCGATGTGGAACTCGTGAAACTCATGGTAATGGGAGAAGGCCTTAACCTTGATGAAGCATTAGCCTTACCATACGCAGTTGAGAATTGCAGCAGAGAAGTGGTGAAAGCTTTGCTAGAACTCGGTGCAGCTGATGTTAACTACCCATCAGGTCCTTCCGGCAAAACGCCGTTACATATCGCCGCGGAAATGGTCTCGCCGGACATGGTGGCGGTGCTGTTAGACCACCATGCTGATCCTAATGTCAGAACTGTGGATGGTGTCACTCCTTTGGACATTCTCAGAACCCTAACCTCGGATTTCCTCTTCAAAGGTGCTGTCCCTGGATTAACCCATATAGAACCAAATAAACTAAGGTTGTGTTTGGAGCTTGTTCAATCAGCGGCTCTTGTGATGTCAAGGGAAGAAGGGAATGCTAATAATAATGCTCCTTCTTCAGAAACTACCATATACCCTCCTAATGATAATCAAGATCACCATAGCAGTGGAGGAGGAAACAACAACAACGTTGGTAACCTTAACTTGGATTCTAGGTTGGTGTATCTTAACCTTGGTGCTACGGTGGGTCAAATGAGTGGTGATGATGATAGCAACCATGGTAGGGAAGCCATGAACCCTGCCATGTACCATCACTCACATGACTTCTAG 1434 0.4819 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPHGTTRVNSPVSTRSGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVSKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLIPHHHPHHHHHHPHDLSVDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPSGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNAPSSETTIYPPNDNQDHHSSGGGNNNNVGNLNLDSRLVYLNLGATVGQMSGDDDSNHGREAMNPAMYHHSHDF. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03086 477 MobiDBLite consensus disorder prediction 454 477 - -
Seca1g03086 477 MobiDBLite consensus disorder prediction 457 477 - -
Seca1g03086 477 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Seca1g03086 477 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Seca1g03086 477 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 465 IPR044284 GO:0099402
Seca1g03086 477 Gene3D - 247 363 IPR036770 -
Seca1g03086 477 CDD BTB_POZ_NPR_plant 8 161 - -
Seca1g03086 477 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Seca1g03086 477 SMART ANK_2a 280 310 IPR002110 GO:0005515
Seca1g03086 477 SMART ANK_2a 315 344 IPR002110 GO:0005515
Seca1g03086 477 SUPERFAMILY Ankyrin repeat 274 358 IPR036770 -
Seca1g03086 477 MobiDBLite consensus disorder prediction 398 432 - -
Seca1g03086 477 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Seca1g03086 477 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Seca1g03086 477 FunFam regulatory protein NPR5 isoform X2 246 363 - -
Seca1g03086 477 SMART BTB_4 25 161 IPR000210 GO:0005515
Seca1g03086 477 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Seca1g03086 477 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Seca1g03086 477 SUPERFAMILY POZ domain 8 159 IPR011333 -
Seca1g03086 477 Pfam Domain of unknown function (DUF3420) 196 257 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03086 Seca-Chr1 85410369 85412597 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca1g03086 BTB 1.4e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03086 K14508 - gmx:100816086 756.903