Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03059 ATGGGGATGGCTGCAGCAGAGTCACAGTTTCATGTGTTGGCTGTTGATGACAGCATCATAGATAGGAAGCTTATTGAGAGGCTTCTCAGAACCTCTTCCTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGCTTACATGAGAATGATGAGAGCAACCCAAATACACCATCTGTTTCTCCTAACAATCATCAGGAGGTGGAAGTGAACCTTGTTATAACAGACTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGTATGCTTTGGTTTCTATTCCTGTCTCATCTATCTTTTAACCATTATATTCTCCACTTTTATCAGTCTTTGTGGTTAA 366 0.4044 MGMAAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLHENDESNPNTPSVSPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKVCFGFYSCLIYLLTIIFSTFISLCG. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03059 121 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 96 IPR045279 GO:0009736
Seca1g03059 121 Pfam Response regulator receiver domain 12 97 IPR001789 GO:0000160
Seca1g03059 121 SUPERFAMILY CheY-like 9 110 IPR011006 -
Seca1g03059 121 ProSiteProfiles Response regulatory domain profile. 11 121 IPR001789 GO:0000160
Seca1g03059 121 Gene3D - 2 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03059 Seca-Chr1 84134116 84136360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03059 1 110 Response Regulator Gene Family AT3G57040 70.270 6.20e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g03059 Response_reg 3.2e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03059 K14492 - twl:119988302 174.481