Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03058 ATGGTGTATTGTGATCATTGTTGGAAAAACGTTTCCGGTTTGCGAGTCGATGATGGTCCCTTATGTTGTAGCGAATGTGGGAAGGTGTTGGAAGACTTCCATTTTTCTCAGGAGCCCACCTTTGTGAAAAATGCGGCCGGGCAGAGCAAATTATCAGGCCATTATGTAAGAACGATTCAAAGTGAGTATTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGATATCAAATATTTAAGTTTCAACCTTGGAGTGAATGATGATAATATGGCCAACCAAGCTTTGGCCTTTTATAGAATAGCACTAGAGCGAAATTTCACCAGGGGACGTAAATCAGAACAAGTGCAGGCTGCTTGTCTCTATATTGCATTCCGGGAAAATAATAAACCTTACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTGCTAGGTGCAGTTTTTTTGCAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCCAGTCTTTTTATTTATAAATATACAAATAATTTGTTAAAGCAAAGGAATGTGCTTGTCTCCGAAACTGCACTGAGCGTTATTGCCAGCATGAAGCGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGCGCAGCATTATACATGTCAGCTCTCGCACATGGTTTTAAGTGCTCTAAGTCAGATATTCTAAGGATTGTCCATGTATGTGAAGCAACGTTGACTAAGCGTTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGATGAATTGAATACGATGGCAAAAGAGCATGAAAAAAACCCAATTAAAATACCAGATGGTGAACTGAACAAATGTGCTTCAAAGGATCTACTATGTGAACACAAGGATAGTGGCGTGCCCTACTTTGCACTTGGATTATGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGCGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAATGACAAAATCACATTCCGAGGAAAGTGCCAATAAGTCAGATGATTTGGCGAAAGCATCAACTGGCGCATGTGAGAGCCAAATAGATGAATTACATGCCTCTGAGCCTGAAAGTATTGCGGCTAAGGAACATGTGGCCACTAAAGATGGTGAGCATGACGAGTCGCATAAAGAAGATGAATCAGAAAGTTTCTCTGATATCGATGATCATGAGGGTGGTAAGGAGTAA 1260 0.4095 MVYCDHCWKNVSGLRVDDGPLCCSECGKVLEDFHFSQEPTFVKNAAGQSKLSGHYVRTIQSEYSASRQRTLDRAYDDIKYLSFNLGVNDDNMANQALAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKQRNVLVSETALSVIASMKRDWMQTGRKPSGLCGAALYMSALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTESASLTIDELNTMAKEHEKNPIKIPDGELNKCASKDLLCEHKDSGVPYFALGLCETCYKDFDKLSGGLGGGLDPPAFQRAERERMTKSHSEESANKSDDLAKASTGACESQIDELHASEPESIAAKEHVATKDGEHDESHKEDESESFSDIDDHEGGKE. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03058 419 SMART cyclin_7 176 259 IPR013763 -
Seca1g03058 419 SMART cyclin_7 76 158 IPR013763 -
Seca1g03058 419 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Seca1g03058 419 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Seca1g03058 419 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Seca1g03058 419 MobiDBLite consensus disorder prediction 374 419 - -
Seca1g03058 419 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Seca1g03058 419 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Seca1g03058 419 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Seca1g03058 419 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Seca1g03058 419 MobiDBLite consensus disorder prediction 341 358 - -
Seca1g03058 419 Gene3D - 173 265 - -
Seca1g03058 419 FunFam Transcription factor IIIB subunit 173 262 - -
Seca1g03058 419 MobiDBLite consensus disorder prediction 341 419 - -
Seca1g03058 419 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Seca1g03058 419 Gene3D - 63 165 - -
Seca1g03058 419 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 355 IPR000812 GO:0006352|GO:0070897
Seca1g03058 419 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Seca1g03058 419 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03058 Seca-Chr1 84023861 84045251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03058 1 353 Inorganic Solute Cotransporters AT2G01280 46.369 9.38e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03058 K15196 - gmx:100817609 613.994