Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g03053 | ATGCTTGCAGTCTCCTCTCCTCCTCTGTTCTCCATGGGATGGCCCTTATTAGAGGAAGAGCCCTTAAGTCATAACCAAAACTACTTATATAAAGATCTTCCTGATCCATCCTCATCAGAGTACTCATCATTTCCACATCAATTCTCTTCTTCACCACAATCACAGGTAGTTGAGATTGAAAAAGGGTCTAGTGCTACACCATCCTCAGATCCCACTATGGTGATCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAGGAAGATCAATGGCTTGATTTCTTCACTTCGTTCACTTCTTCCATTGTCACATCAAACGAAAAAGATGAGCATTCCAGTAACAATTTCGCGAGTCTTAAAATACATACCTGAATTACAACAACAGGTGGAAGGACTAACTAAGAAAAAAGAGGAGCTTCTATCCAGAATTTCTCGGCAAGGAGATGCACTCAACAAAGAATCTCAAAGGAAGATTATTCTCTATCAAAACTCTGATTTTGTGGTTTCAACAAATAGACTCAATGATAATGAGACTACCATTGAGATTTCTTCTTGTGAAGTCCACAAGACCCCTCTATCTGAGATATTGCTCTGTTTAGAAAATAATGGGCTTGTTCTGCTTAATGCTTCTTCCTCTGAAACCTTTGGAAGGAATAGGGTCTTCTATAACTTGCATTTCCAGGTATATATATATACTATTTCTTTAATTTTTCTATTGTACATTGTTTTTATTTATTTATTTATTTATATTAACTTATTTGTGCCAATTAAGAGAGAGATGTTTATCTGTTATATATAA | 804 | 0.3644 | MLAVSSPPLFSMGWPLLEEEPLSHNQNYLYKDLPDPSSSEYSSFPHQFSSSPQSQVVEIEKGSSATPSSDPTMVIKKLNHNASERDRRRKINGLISSLRSLLPLSHQTKKMSIPVTISRVLKYIPELQQQVEGLTKKKEELLSRISRQGDALNKESQRKIILYQNSDFVVSTNRLNDNETTIEISSCEVHKTPLSEILLCLENNGLVLLNASSSETFGRNRVFYNLHFQVYIYTISLIFLLYIVFIYLFIYINLFVPIKREMFICYI. | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g03053 | 267 | SMART | finulus | 81 | 133 | IPR011598 | GO:0046983 | |
Seca1g03053 | 267 | Gene3D | - | 70 | 159 | IPR036638 | GO:0046983 | |
Seca1g03053 | 267 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 76 | 145 | IPR036638 | GO:0046983 | |
Seca1g03053 | 267 | Pfam | Helix-loop-helix DNA-binding domain | 76 | 128 | IPR011598 | GO:0046983 | |
Seca1g03053 | 267 | MobiDBLite | consensus disorder prediction | 30 | 72 | - | - | |
Seca1g03053 | 267 | Coils | Coil | 124 | 144 | - | - | |
Seca1g03053 | 267 | MobiDBLite | consensus disorder prediction | 27 | 72 | - | - | |
Seca1g03053 | 267 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 64 | 229 | - | - | |
Seca1g03053 | 267 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 127 | IPR011598 | GO:0046983 | |
Seca1g03053 | 267 | FunFam | Transcription factor ORG2 | 71 | 156 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g03053 | Seca-Chr1 | 83901860 | 83903475 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g03053 | 7 | 230 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G56970 | 42.241 | 3.87e-47 | 156 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca1g03053 | HLH | 9.5e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g03053 | - | - | gmx:100803424 | 249.98 |