Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03053 ATGCTTGCAGTCTCCTCTCCTCCTCTGTTCTCCATGGGATGGCCCTTATTAGAGGAAGAGCCCTTAAGTCATAACCAAAACTACTTATATAAAGATCTTCCTGATCCATCCTCATCAGAGTACTCATCATTTCCACATCAATTCTCTTCTTCACCACAATCACAGGTAGTTGAGATTGAAAAAGGGTCTAGTGCTACACCATCCTCAGATCCCACTATGGTGATCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAGGAAGATCAATGGCTTGATTTCTTCACTTCGTTCACTTCTTCCATTGTCACATCAAACGAAAAAGATGAGCATTCCAGTAACAATTTCGCGAGTCTTAAAATACATACCTGAATTACAACAACAGGTGGAAGGACTAACTAAGAAAAAAGAGGAGCTTCTATCCAGAATTTCTCGGCAAGGAGATGCACTCAACAAAGAATCTCAAAGGAAGATTATTCTCTATCAAAACTCTGATTTTGTGGTTTCAACAAATAGACTCAATGATAATGAGACTACCATTGAGATTTCTTCTTGTGAAGTCCACAAGACCCCTCTATCTGAGATATTGCTCTGTTTAGAAAATAATGGGCTTGTTCTGCTTAATGCTTCTTCCTCTGAAACCTTTGGAAGGAATAGGGTCTTCTATAACTTGCATTTCCAGGTATATATATATACTATTTCTTTAATTTTTCTATTGTACATTGTTTTTATTTATTTATTTATTTATATTAACTTATTTGTGCCAATTAAGAGAGAGATGTTTATCTGTTATATATAA 804 0.3644 MLAVSSPPLFSMGWPLLEEEPLSHNQNYLYKDLPDPSSSEYSSFPHQFSSSPQSQVVEIEKGSSATPSSDPTMVIKKLNHNASERDRRRKINGLISSLRSLLPLSHQTKKMSIPVTISRVLKYIPELQQQVEGLTKKKEELLSRISRQGDALNKESQRKIILYQNSDFVVSTNRLNDNETTIEISSCEVHKTPLSEILLCLENNGLVLLNASSSETFGRNRVFYNLHFQVYIYTISLIFLLYIVFIYLFIYINLFVPIKREMFICYI. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03053 267 SMART finulus 81 133 IPR011598 GO:0046983
Seca1g03053 267 Gene3D - 70 159 IPR036638 GO:0046983
Seca1g03053 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 145 IPR036638 GO:0046983
Seca1g03053 267 Pfam Helix-loop-helix DNA-binding domain 76 128 IPR011598 GO:0046983
Seca1g03053 267 MobiDBLite consensus disorder prediction 30 72 - -
Seca1g03053 267 Coils Coil 124 144 - -
Seca1g03053 267 MobiDBLite consensus disorder prediction 27 72 - -
Seca1g03053 267 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 64 229 - -
Seca1g03053 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Seca1g03053 267 FunFam Transcription factor ORG2 71 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03053 Seca-Chr1 83901860 83903475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03053 7 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.241 3.87e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g03053 HLH 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03053 - - gmx:100803424 249.98