Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03047 GTTTGCTTCGTCGCCTCCGTCTTTTCCCTCTCTCACGCTTCCATCATCGACGCCATCGCCGATCCGAACTTTCCACGTGTCGCCACGCTAGTTCATCGATGGATTGGAGAAGACGAGGTTGTGGCCGTCAATCTATTGATCGCAGCGGTTTGGTCGTGGGCTCTAATCACCGTATTTTCTAGGGTTGTTTTCGGGAGGCATTATGTTCTCAATGTCTTCTTTGGAGCCTGCTTCGGTGTCCTCGAAGTTGTCTTCATCGTTCTGAAAACCACTAGACATATTGATTCTCAGTTGAATATTAATCGTTCCGCCTCAAATGTGCTTGGGTACACCAAAAAACAAGAGGAAAGGAATTTTCGTGGTGTTATTGTATTAGAGTTATCTGATGATGGATTCCAAAGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAGGGCCCTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAATTGGCTAAGGCTTTGGGATTGCAGCCAAGACAGATTGCTATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAACTGGAGAAGGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAAGCTGACAATAATGTCCTTAAGGCTCAGAATCAGAAACTACATGCAGAGTTCTCTTCTTTGGCACTGGCTCATGGGAAGACATGTCCTGTCAACTACCTTCTATGGGACAAAGAAGATAAGAGCTTATACACACTGTGCAAAGGAATCTGTGAGTGA 783 0.4534 VCFVASVFSLSHASIIDAIADPNFPRVATLVHRWIGEDEVVAVNLLIAAVWSWALITVFSRVVFGRHYVLNVFFGACFGVLEVVFIVLKTTRHIDSQLNINRSASNVLGYTKKQEERNFRGVIVLELSDDGFQSGEKKKRLNLEQVRALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNNVLKAQNQKLHAEFSSLALAHGKTCPVNYLLWDKEDKSLYTLCKGICE. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03047 260 Coils Coil 184 225 - -
Seca1g03047 260 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 44 89 IPR036938 -
Seca1g03047 260 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Seca1g03047 260 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Seca1g03047 260 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Seca1g03047 260 SUPERFAMILY Homeodomain-like 132 194 IPR009057 -
Seca1g03047 260 Gene3D - 130 199 - -
Seca1g03047 260 FunFam Homeobox-leucine zipper protein ATHB-13 129 196 - -
Seca1g03047 260 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 4 120 - -
Seca1g03047 260 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Seca1g03047 260 Pfam Homeobox associated leucine zipper 192 229 IPR003106 GO:0006355|GO:0043565
Seca1g03047 260 SMART HOX_1 135 196 IPR001356 GO:0003677
Seca1g03047 260 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 126 230 IPR045224 GO:0003700
Seca1g03047 260 Pfam Homeodomain 137 190 IPR001356 GO:0003677
Seca1g03047 260 CDD homeodomain 137 193 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03047 Seca-Chr1 83492573 83495837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03047 127 229 Homeobox Transcription Factor Family AT5G15150 79.048 4.69e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca1g03047 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03047 K09338 - pop:7495966 182.956