Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g03045 | ATGGGCGCCATCGTTCTCGATCTCCGACCCGGTACAGTTGGTCAGGAAGGGAAAGCAGGGTTGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCCGCTGGGCAACAGGGGTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAAAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGTACAGCTTACAAGGCTATTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAGGGAGGTTCAAATTGGAGGGAAGAGAGAGTTTGAGCAGCGAATGGAAATGCTGGGAAGGTTAAGAAACCTCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGGTAAGTTTATGGATCCACTGACAAAAGGGAAGTATCCAAAAAGAATGGTGTCTTTAGTGGGAAACCGATTACCAAATTTCACTGAAGAGCAATCTAAGCTACTTATTGGCTCATTTGATTTTCTTGGACTAAATTACTACACCACTAATTATGCTGCTCATATAACCCATCCAAGTAATGATGAAAGCAAATCTATCTATTATAAGGATTCGCATGTCAACTTAACAAGTAAGAACACCTTGATTTCAATTCTTAATCAATAA | 720 | 0.4278 | MGAIVLDLRPGTVGQEGKAGLSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAILDDGTVVAVKRLREVQIGGKREFEQRMEMLGRLRNLNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHGKFMDPLTKGKYPKRMVSLVGNRLPNFTEEQSKLLIGSFDFLGLNYYTTNYAAHITHPSNDESKSIYYKDSHVNLTSKNTLISILNQ. | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g03045 | 239 | Pfam | Protein kinase domain | 69 | 153 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g03045 | 239 | SUPERFAMILY | Protein kinase-like (PK-like) | 70 | 161 | IPR011009 | - | |
Seca1g03045 | 239 | Pfam | Glycosyl hydrolase family 1 | 152 | 216 | IPR001360 | GO:0004553|GO:0005975 | |
Seca1g03045 | 239 | ProSiteProfiles | Protein kinase domain profile. | 66 | 239 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca1g03045 | 239 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 141 | - | - | |
Seca1g03045 | 239 | Gene3D | Glycosidases | 143 | 239 | - | - | |
Seca1g03045 | 239 | PANTHER | OS05G0588300 PROTEIN | 37 | 234 | - | - | |
Seca1g03045 | 239 | FunFam | pollen receptor-like kinase 1 | 35 | 141 | - | - | |
Seca1g03045 | 239 | ProSitePatterns | Protein kinases ATP-binding region signature. | 72 | 94 | IPR017441 | GO:0005524 | |
Seca1g03045 | 239 | SUPERFAMILY | (Trans)glycosidases | 144 | 215 | IPR017853 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g03045 | Seca-Chr1 | 83423900 | 83425226 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g03045 | 23 | 153 | Receptor kinase-like Gene Family | AT1G68400 | 67.376 | 1.84e-57 | 191 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Seca1g03045 | Glyco_hydro_1 | 1.6e-11 | CL0058 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g03045 | - | - | csv:101217010 | 216.468 |