Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03045 ATGGGCGCCATCGTTCTCGATCTCCGACCCGGTACAGTTGGTCAGGAAGGGAAAGCAGGGTTGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCCGCTGGGCAACAGGGGTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAAAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGTACAGCTTACAAGGCTATTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAGGGAGGTTCAAATTGGAGGGAAGAGAGAGTTTGAGCAGCGAATGGAAATGCTGGGAAGGTTAAGAAACCTCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGGTAAGTTTATGGATCCACTGACAAAAGGGAAGTATCCAAAAAGAATGGTGTCTTTAGTGGGAAACCGATTACCAAATTTCACTGAAGAGCAATCTAAGCTACTTATTGGCTCATTTGATTTTCTTGGACTAAATTACTACACCACTAATTATGCTGCTCATATAACCCATCCAAGTAATGATGAAAGCAAATCTATCTATTATAAGGATTCGCATGTCAACTTAACAAGTAAGAACACCTTGATTTCAATTCTTAATCAATAA 720 0.4278 MGAIVLDLRPGTVGQEGKAGLSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAILDDGTVVAVKRLREVQIGGKREFEQRMEMLGRLRNLNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHGKFMDPLTKGKYPKRMVSLVGNRLPNFTEEQSKLLIGSFDFLGLNYYTTNYAAHITHPSNDESKSIYYKDSHVNLTSKNTLISILNQ. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03045 239 Pfam Protein kinase domain 69 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03045 239 SUPERFAMILY Protein kinase-like (PK-like) 70 161 IPR011009 -
Seca1g03045 239 Pfam Glycosyl hydrolase family 1 152 216 IPR001360 GO:0004553|GO:0005975
Seca1g03045 239 ProSiteProfiles Protein kinase domain profile. 66 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03045 239 Gene3D Phosphorylase Kinase; domain 1 33 141 - -
Seca1g03045 239 Gene3D Glycosidases 143 239 - -
Seca1g03045 239 PANTHER OS05G0588300 PROTEIN 37 234 - -
Seca1g03045 239 FunFam pollen receptor-like kinase 1 35 141 - -
Seca1g03045 239 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Seca1g03045 239 SUPERFAMILY (Trans)glycosidases 144 215 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03045 Seca-Chr1 83423900 83425226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03045 23 153 Receptor kinase-like Gene Family AT1G68400 67.376 1.84e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g03045 Glyco_hydro_1 1.6e-11 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03045 - - csv:101217010 216.468