Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03040 ATGATCAATCAGAAGGTTGAAACTGAAGGCAGCTACAGTAACTATGATGTTATATCTCAGAGTGTGTTTGGAGCAGAGGAGTCTGTTTCTAGCCAGCCAGAAAGAACAGGGAGATTGGAATCCAAGAAGAAAATGAAGAAAGTGAGGTCAATAAGGCTTCATAGATTGTCAAGCATGAGATCATCCACCAGAGGTGGGAAACCCCATGATGACAATCTCTCCATTCTCTCATCTGATGGCACAGAAAGTTCAGGGCATCCAACCCCAATTGAAATGGAAGATGGATCACCCAATTACATGAAGGCCACAAGTAGTTCTCATGCAAAGGATGGTTTTCAGAGTACTCAAAGACTTTTCACAAAGAAGAGTTTGACAAGAATGTCAACTTTGAAACTGAAGAAGAATCTGACCAGAAAGTTATCTGGAAGGACTGAGCCAAAGAGGAAACTGAAGTCATCAAGATCAATCAAGGTTGCAACTGTGAAGGGCTCAAAAGGGAAGCTTTCTGAATCCATGTATGGCATTGATGGCCAGAATAGGAAAAATACAATTGATGCTGGTAACAAATCCCAGAGAGTCCTTACCAGAAGATTAAGCTTGAAACCTGTGAGGATCTTAACAAAAATGTCCACTTTCAAGTCAAAGAATTCTTCCATGGAGAAAGGCCCTTTGATGTCTCAATCTCCAGACTCAAGCTTGCATAAAGCCACATGTTCTTCCACTCTCAAGGATTCCCATTTCATTGACCTCCCACAAGATGGAAGTGATTCTCAAGTAGTACCAGCTATGAAGGTTTGTACATATAGTTACTGCTCTCTTCATGGCCATCGCCACGGCAATTTGCCTCCACTGAAGCGCTTTGTGTCAATGAGGAGGCGTGTGTTGAAGAGCCAAAAGTCCATGAAAATGGATGGCAGATCAAAGCAGTTTGGTAATGCAAGGAAAGCCACTCAGAAAACCAAAACTGTCCACAGTGAAGATGGCAGCTCTCATTTTCAAAATGTGAAAAAGCTGGCAAGGGACTCGCGTGTTAGGCCTCATCACACTCCAGCATCCACAGTTACTGAAGGTGGCACTTCTTTGGGACAGGATGAAGAAAAATACAATTTCAGATGTAATGCTGAGGTGTTATTGGGAGAAACATCATTTCCACATTTGATAAATTTTGAGGAGTATCTTGGTAATTCTCCTGCAGTTGAAAGCTACACTTCTCTGGCTGTCAAGGAAACAAATATAGAATGTTGCTGCATTGCTACTGAAGAAGAAAAATCTGATCCTGAGGTAACTGAGACAGCAGGGAATGACAAGAATATGGCAGCATGCAAGATGAATGATGAAAGTGCTACTGTGGAATCAACATTAATAGATGTAGCCGAGTTTTCTGGTTCTGGTATTGAGATATTGGAGGGAGAAGTAACAACTGAAGGCAAAAATATGGAGCCAGATTCTGAAGTGCTGCAGAAGAGTTCAGTAGAGGAAGAGCTTAAACCTGCTAGCACTGCTGATGTTAAAATGCAGGAAAGAGATCAGAAATATATAAAAATGTGGCAATTGATGTATAAGCATGCAGTATTAAGCAACGCGGGGAAAAGTGAAAACAAGGTGCCCTTGGATGGAAAGGACAAGGAAGAAAAAGAGAAAGATGCTATTGAATTTAATGTAGGAGATAGCTCTTCTTGTGATAATTATTGTGAAACAGATCAGGATATGGATGATGAAAATAAGAATGTAATTGAGCTGGTGCAAAAAGCATTTGACGAAATTCTTCTCCCAGAAGCTGAAGACCTCTCTTCTGATGATCATTTTAAATCTAGAGGCATAGGCTCAAATGAGGTACTCCCAGAAAAGAGTGAAAGTACCAGAGAAGAAAGGAATGCCTCAACATCCACTGAATCTCCTAAGGAAGCACAGAGGATGGGGACTACACCTGACCGAAGAACACCAAAAAGCTGGAGCAATCTGAAGAAGTTACTCCTCTTGAAAAGGTTTGTAAAGGCATTAGAGAAGGTAAAAAACATCAACCTACAAAGACCGAGACAATTGCCTTCAGATGCTAACTTTGAAGCAGAAAAAATCTTTCTCAAGCACCAAACAGCAGAAGAGAGAAAAAAAGCTGAGGAATGGATGCTTGACTATGCACTTCAGAAGGTCATTTCTAAACTGGCACCTGCTCAAAGACAAAGAGTGACACTTCTAATAGAAGCTTTTGAAACAGTTCTGCCATTTCAAGATGCTGAAAATGGTTCACAGACTTCTGCAACAGTGGAACCTCAAACTAATCCAATTCAATGCCTTGATGATTCCTCAGGCCAGAGCAAAGAAGAAACAGACAAAGGAAGGGATTATGGTTATTCTGCTAAGATATTGCTTAGAAAAGCATTGTCCTCTCATAATAGTACTATGGAATTTTCAGATAATGCTGGTGATAATCCAATGCCTGAACTGCACAGTCCTATTGTGCTCAAAGAAAGATATCTTGAGCATCCTGAGACCAAGACACCAAAGGATATGCCTGCATCTGGAGCCATTGAAGATGATTTGAATGGAAACCAAAGTTCAGCCGACGGTTATGATAATGGGGAGAAGATCTCAATTGACAATGATAATATTTATCATGTAGAGATTGAAGATTCCAGATCACATTCCTTATGTAAGCCAGGTGAAATAATAAGCAGTTGTCATGAGGAGGCTCCAACCAATGTAATTGCCATTGCCAATGAAGTTCCTGGAGATTTGATATCAAATTTGAATACAGAAAACCCAAATATCAAATCTGAGTCAACTGAAAGAGATTTTGAATCCAAGAATGTGATTGGTGATGATAGGGAGGAACTTTCTACGTCGAAAAGTTTACTCCTAAATGGTCTTGTCAGATCACTCAGATCTAATTTGGTTGGTTCAGGAGCACCTTCAAACCTATTAGATGAATCAACAGTGGACAGAACAGAAAGGACTGAAAAAGCTAAGCTGGAAACTGAGACTCCTGAAGAGATACCTACACACCAACAATCTGAAACTCCTAAAAGTGCTGTTGTAGGACCTGAGACCCAGCCAGAGAAACAGAGCTATGCAGGACTGTGGTTCATGGTGTACAAGCACATGGTATCAGATCTGGCTGAAAACAATTCCAAGTCACTTAATGATGGGGCAGATGAGAAAGAGTCAGGGTATGAAGGCAGCAGAACAAGAGGAAGTTCCATCACTTATGAAAGTACACATGTGATTGATCAAGATCATGCTGTAACTGACCCAGAAGTTGAACTCCACAAGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATCCTTCCGGATGATCAGGACCATTTACCAGACAGGCAGTCACTCACTCAGAACTCAATTTTAGACAATTCAGAACAATCCAGCAGGACTGAGAGAATGTACAGTGAAGGTCTGAACCAAAAAGAAGAAAGGATGGAATCTGGAAATGGAATAACTCAAGACGAAAAACAAGAACCGGCACCAAAGGAGGGAAACAAACCAAACCATCAACTGTCTAGAAGCTGGAGCAATCTTAGAAAGGTTATCCTGCTTAGGAGATTCATCAAGGCATTAGAAAAAGTAAGGAAATTCAACCCAAGAGGGCCAAGATATCTACCTATAGAGCCTGATTCAGAAGCTGAAAAAGTTAATTTAAGGCACCAAGACATGGAAGAAAGAAAAGGAACAGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCTGCAAGGAAAAGAAAAGTGGAGCTGCTAGTGGAAGCTTTTGAAACAGTCATACCAACCATAAGAAATTGA 3819 0.4072 MINQKVETEGSYSNYDVISQSVFGAEESVSSQPERTGRLESKKKMKKVRSIRLHRLSSMRSSTRGGKPHDDNLSILSSDGTESSGHPTPIEMEDGSPNYMKATSSSHAKDGFQSTQRLFTKKSLTRMSTLKLKKNLTRKLSGRTEPKRKLKSSRSIKVATVKGSKGKLSESMYGIDGQNRKNTIDAGNKSQRVLTRRLSLKPVRILTKMSTFKSKNSSMEKGPLMSQSPDSSLHKATCSSTLKDSHFIDLPQDGSDSQVVPAMKVCTYSYCSLHGHRHGNLPPLKRFVSMRRRVLKSQKSMKMDGRSKQFGNARKATQKTKTVHSEDGSSHFQNVKKLARDSRVRPHHTPASTVTEGGTSLGQDEEKYNFRCNAEVLLGETSFPHLINFEEYLGNSPAVESYTSLAVKETNIECCCIATEEEKSDPEVTETAGNDKNMAACKMNDESATVESTLIDVAEFSGSGIEILEGEVTTEGKNMEPDSEVLQKSSVEEELKPASTADVKMQERDQKYIKMWQLMYKHAVLSNAGKSENKVPLDGKDKEEKEKDAIEFNVGDSSSCDNYCETDQDMDDENKNVIELVQKAFDEILLPEAEDLSSDDHFKSRGIGSNEVLPEKSESTREERNASTSTESPKEAQRMGTTPDRRTPKSWSNLKKLLLLKRFVKALEKVKNINLQRPRQLPSDANFEAEKIFLKHQTAEERKKAEEWMLDYALQKVISKLAPAQRQRVTLLIEAFETVLPFQDAENGSQTSATVEPQTNPIQCLDDSSGQSKEETDKGRDYGYSAKILLRKALSSHNSTMEFSDNAGDNPMPELHSPIVLKERYLEHPETKTPKDMPASGAIEDDLNGNQSSADGYDNGEKISIDNDNIYHVEIEDSRSHSLCKPGEIISSCHEEAPTNVIAIANEVPGDLISNLNTENPNIKSESTERDFESKNVIGDDREELSTSKSLLLNGLVRSLRSNLVGSGAPSNLLDESTVDRTERTEKAKLETETPEEIPTHQQSETPKSAVVGPETQPEKQSYAGLWFMVYKHMVSDLAENNSKSLNDGADEKESGYEGSRTRGSSITYESTHVIDQDHAVTDPEVELHKIEAIKMVEEAIDSILPDDQDHLPDRQSLTQNSILDNSEQSSRTERMYSEGLNQKEERMESGNGITQDEKQEPAPKEGNKPNHQLSRSWSNLRKVILLRRFIKALEKVRKFNPRGPRYLPIEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVIPTIRN. 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03040 1272 MobiDBLite consensus disorder prediction 1041 1071 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 596 649 - -
Seca1g03040 1272 Pfam Plant calmodulin-binding domain 1165 1268 IPR012417 GO:0005516
Seca1g03040 1272 Pfam Plant calmodulin-binding domain 636 741 IPR012417 GO:0005516
Seca1g03040 1272 MobiDBLite consensus disorder prediction 1138 1166 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 747 769 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 348 362 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 630 648 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 319 347 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 977 998 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 615 629 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 214 236 - -
Seca1g03040 1272 SMART CaM_binding_2 628 741 IPR012417 GO:0005516
Seca1g03040 1272 SMART CaM_binding_2 1144 1268 IPR012417 GO:0005516
Seca1g03040 1272 MobiDBLite consensus disorder prediction 534 552 - -
Seca1g03040 1272 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 741 IPR044681 GO:0005516
Seca1g03040 1272 MobiDBLite consensus disorder prediction 1106 1174 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 747 780 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 297 362 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 1115 1137 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 531 568 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 964 1018 - -
Seca1g03040 1272 MobiDBLite consensus disorder prediction 22 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03040 Seca-Chr1 83189118 83194439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03040 67 741 Calmodulin-binding Proteins AT2G38800 27.713 1.00e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03040 - - aprc:113861458 1680.23