Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03038 ATGTGCAGACGGAGAGATTTTATTGGGGTTTTGACTGCTGTTTCTGCTGAGAAAAGATCCGTTCGTGATGGAAGGACCACCCGTGTGGTCCAAATGGAGCTTTTGGATGATACGGGCAAGGCTCACTGTGCTGTGTTTGGAAATTATGTGGACACTGTGAATGAGTTTGTTAGGGAGACTGGCAGTGAGTTACTCGTTGTTGTCGTGCAGTATGGCAAAGTAAAGAGATTCAGGGATAAGTTAAATGCCCATTGTGGTATTGTGGTGTTGCAGAATGTTCTTAACACAACAAGGATTCTCTGGAATCCTGACATAGCTGAAGTGGGTGTGGACATGGGAGCACCTCTGGGAACCATAGAAGACCACAATGCGAGTGTATCTCCAGTGGATGAATTCTTGCACATGTATCCAAGGAAGACAATCAGTGAACTTAATGACACTAAAGAGAATGGATTTTTCATTGTGCTGGCAACTATAGTCACAGTTCTAACTGATAGTAGCTGGTGGTACTCTGTATGCAAGTGTAATAGAGCGGTGACAGTTGACGGAGACAAATACTATTGTGCCCACTGTGCATGTAATGTGACTGATGTTACCCCAAGGTATAAGTTGAAGGTTGAGGTGTTTGATGGGGATGAGACAACTGCATTTGTCATGTTCGATAGTGATGTTGAGTTGGTCACTAGTGTTTCATGTTCTTCCCTCCTTGCTCTCTACAAGGATGGTGGAATAGACCAGCTCCCGCCAGAGCTGGAAGATTTGGGGGGAAAAGAGTTCCTTTTCAAGGTGGAAAAGACTGATGACTACGCTTTCAAATATGACGACACCTTCAAGGTTAAGAAGGTTTGCATTGTTGAGGAAATAATTGAGCATTTCAAGGAGTTAAAGAGGATATCAACTCCTAAAGCTGCTGGATGCCTTATTGGGACTCTTGCTGATGCAACAGGTGAGGGTAGCAGTTGTGGCACCAATCTGGATGGCGAGAAGGGCAAAAAAGTGGCCTAA 1005 0.4448 MCRRRDFIGVLTAVSAEKRSVRDGRTTRVVQMELLDDTGKAHCAVFGNYVDTVNEFVRETGSELLVVVVQYGKVKRFRDKLNAHCGIVVLQNVLNTTRILWNPDIAEVGVDMGAPLGTIEDHNASVSPVDEFLHMYPRKTISELNDTKENGFFIVLATIVTVLTDSSWWYSVCKCNRAVTVDGDKYYCAHCACNVTDVTPRYKLKVEVFDGDETTAFVMFDSDVELVTSVSCSSLLALYKDGGIDQLPPELEDLGGKEFLFKVEKTDDYAFKYDDTFKVKKVCIVEEIIEHFKELKRISTPKAAGCLIGTLADATGEGSSCGTNLDGEKGKKVA. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03038 334 Gene3D - 132 298 IPR012340 -
Seca1g03038 334 Gene3D - 3 110 IPR012340 -
Seca1g03038 334 PANTHER OS03G0429900 PROTEIN 139 272 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca1g03038 334 SUPERFAMILY Nucleic acid-binding proteins 136 280 IPR012340 -
Seca1g03038 334 Pfam Replication factor-A C terminal domain 152 286 IPR013955 -
Seca1g03038 334 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Seca1g03038 334 CDD RPA1_DBD_C 139 282 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03038 Seca-Chr1 83169324 83172273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03038 152 263 Core DNA Replication Machinery Family AT5G08020 26.957 1.87e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03038 - - lja:Lj1g3v3385890.1 268.085