Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03021 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCAATCGGTAATTGCGAGATTACGGTCGAGGCCAGCCGCTTCACCTGCAACTCCGATTCGAACGACCTCATAATCTCTCTTCCCCGAAGCGGAAAAATCAAAGTATCAGTGGTAAAAGATGTATCTGCGAACAATCAAAATGCCTCTGAGAATTTCAAGTCCGAAGATAAAGAACACGAGTTTGTTCTTGTTAATCCCAAAGATGTTGATGATGTTAGCAAATCCTACCTTCAGGAAGTACTGCAAATGTATATGACAGAGCTACCTGGAATGAATTATGCTGCGAATACCGGAAAACAATCAAAGTTTCTTGAGAGATGTGTGAGTAATGGGAAATATCGAACACTACTTCTGAAATCCAGTTCTGTTGGAGATTCAGGAAAGGTTATAGCTGCAATTACGTATCAAATAATTCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAAATTATCAACGGAAGGGATTTGGTCATCTTTTGTTTCTAGAGCTATTAAAGAGACTTCAAAATGTTGGTATTCGCTCTATCTTCTGTTGGGGAGACAAAGCATCTGAAGGATTTTGGCTTAAACAGGGCTTTTTATCAATAGCACAGGTGGATACAAAAGGTAGAGCTCGCAGGTTGCCTGTGAAAGCTGATATTCGCAAATCACTATGCTTTCCTGGTGGTTCAACTCTCATGGTTTTCCACCTAAGGAAGGGATTCTTAGCTGATGATGCTAACGCTGTGAAGTGTCTCCCCTCACAGCTTCATCAGAATTCCTTTACACCTGCCATTGTTGAAAATACACAGCTAGAATTTTCAGGAGGGTTACACATTGATTTGAAAATTTCAAATCTGTCTTCCCATAAAACAGCAACAGATCAAAGTCAACCTGAAGTTTTGGTCAAAGATGGATCTTCAAGAGAATATGACAGACTCAGTGGGTTTGACAGTCGCAATCCTAAGAACTGCCGCAGTGACGTTGTTCCTTTTGCCAGAGCTGCAGATTGTTCACAAGATGGAATTGATGCTAATGTGAAGTATTCTCAATCTACAAAAGGTGAAAAGAGGGCCTGGGAAGCCTCTTTATCCTCGTTGAAGTCAAAAAGAGTGAAGGGGAGCCAGTTGGTTGACTGTCGATCAGATTCTAGCTGGGGTTTTATCTCAGAGGCTGATAGGGCCAATCCTTGTTTTGTGGAAGTCCCTCACGTTGATATTGTGAAAAATTCTGAAAAATGTATTGGGGATTATTTGCATTTCGAAGCTCCCACCAACATAGAACTGCCAACAAGTAAACAATGCATCAAAATAATGTTGATGAATATCGCTGATGATGCCAAGAAAATGCAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTATTGCCTATGATGGAAATGCGACCACACATGTTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACTGCCCTCTGTTCAGGTGCTTGGGTGGTCTCTTCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATTGCCTCACATACTGAATGATAAGGATTATCAGTTGAAGTACAAATCTGATTTAAAAAGTGCAATTTCCCGAGCAAAAGCTAGCCCCCATGCTTTGTTTAAGGGGTATAACATATGTATTGCAGCTCATGTTCAAACTACTGCTAAAACACTGACTGCTATTGTCAGGTCCGCTGGTGCTAATGTAAGTCCTAGTGTTTCTACTGATTTAAATTTAAGTAAACCTTAA 1791 0.407 MAPKRKPSSPISIGNCEITVEASRFTCNSDSNDLIISLPRSGKIKVSVVKDVSANNQNASENFKSEDKEHEFVLVNPKDVDDVSKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVSNGKYRTLLLKSSSVGDSGKVIAAITYQIIPADTEYAEIPLAAVNANYQRKGFGHLLFLELLKRLQNVGIRSIFCWGDKASEGFWLKQGFLSIAQVDTKGRARRLPVKADIRKSLCFPGGSTLMVFHLRKGFLADDANAVKCLPSQLHQNSFTPAIVENTQLEFSGGLHIDLKISNLSSHKTATDQSQPEVLVKDGSSREYDRLSGFDSRNPKNCRSDVVPFARAADCSQDGIDANVKYSQSTKGEKRAWEASLSSLKSKRVKGSQLVDCRSDSSWGFISEADRANPCFVEVPHVDIVKNSEKCIGDYLHFEAPTNIELPTSKQCIKIMLMNIADDAKKMQLTKVIEDLGGTIAYDGNATTHVVTGKVRKTLNFCTALCSGAWVVSSSWLKESFREGRFVDELPHILNDKDYQLKYKSDLKSAISRAKASPHALFKGYNICIAAHVQTTAKTLTAIVRSAGANVSPSVSTDLNLSKP. 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03021 596 Gene3D BRCT domain 435 550 IPR036420 -
Seca1g03021 596 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 73 215 IPR016181 -
Seca1g03021 596 Gene3D - 69 223 - -
Seca1g03021 596 SMART BRCT_7 438 516 IPR001357 -
Seca1g03021 596 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 64 230 - -
Seca1g03021 596 SUPERFAMILY BRCT domain 446 528 IPR036420 -
Seca1g03021 596 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 78 231 IPR000182 GO:0016747
Seca1g03021 596 Pfam BRCA1 C Terminus (BRCT) domain 454 513 IPR001357 -
Seca1g03021 596 Pfam Acetyltransferase (GNAT) family 136 209 IPR000182 GO:0016747
Seca1g03021 596 ProSiteProfiles BRCT domain profile. 445 526 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03021 Seca-Chr1 82900004 82906587 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca1g03021 Acetyltransf_1 2.2e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03021 - - gmx:100806087 911.753