Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03020 ATGTTAAGGCAAGATCTACAAAATGATATTTACAAGACACTGAGAATAAGTTATGATGGATTGCTAGATATAGAGAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAAGGGAGCACCAAAGAATATGTGACACAAATATTGCAAAATTGTGGTCTTAATCCATTGATTGGTATAGATGTTCTTATTGAAAAATCATTAATAACTTATGATGGGTGGCATTTGGGGATGCATGATTTACTTCAAGAAATGGGTAGAAATATTGTTCTGCATGAATCTCCTAATGATGTTGGCAAGCGAAGTAGGTTATGGTCTTTCAAGGACGTTGATCAAGTATTGAGAAATAATAGGGGAACTGAATCCATTCAAGCTGTAGTTCTAAATCTGCCTGAACCATGTGAAGCACATTGGAACCCTGAAGCCTTCTCAAAGATGAGTAATCTTAGACTGCTCATGATATTAAATAAATTGCACCTTCCACTCAGCCTCAAATGTCTTCCCAGTGGGTTAAAAGTTCTTGTATGGAGGGATTATCCTCTCGAATCATTGCCAGTTGGAGACCATTTGGATGAACTTGTTGACCTTGATATGTGTCATAGCAAAATAAAACACCTTTGGAGAGGAACAAAGTTTATGGGAAATTTGAAGACCATCAATTTGAGAAATTCCAAAGATCTCTATATAACTCCAGATTTCACTGGAATACCAAATCTTGAAATATTGGATCTTGAAGGCTGCATCAACCTAGTTGAGGTTCATGCATCTCTTGGACTTCTTAAAAAGCTTTGGTATGTGTCATTGGAAGATTGCAAAAATCTTAAAATCCTTCCAAGAAAATTGGAAATGGATTCTTTAAAGCGTCTGATTCTCTCAGGCTGCACAGCAGTTAGAAAGCTTCCCGAGTTTGGGGAAAGTATGACAAATCTGTTCATGCTTGCCTTAGACCAGACTTCCATATCTGAACTACCTTCATCTGTTGGTTACTTGACAGGTCTTAATATCTTGCTTTTAAGGGATTGTAAAAATATTGTTTACCTTCCAAATACCTTTTCTAATTTGAAATCTCTCAGAAGGCTCAATGTCTCTGGTTGCTCAAGATTTTCTAAGCTGCCTGATAATTTGAATGAAAATGAAGCTTTGGAGTGTCTTAATGTGAGTGAGACTGCTATAAGGGAAGTGCCTTCATCCATTGTTCACTTAAAAAACCTTACACTACTTCTATTTCATGGATGCAAAGGACTAACATCAAACTCACAAAGCTCACTTCTCCCTTTGGGGAATATTTTTGGGGGTTTATCCTCATTGAAGAAACTGGACTTAAGCTATTGCAATCTCCATGATGGATCAATTCCTGATGATCTTGGCTGCTTATCATCATTGGTAACATTAGATCTAAGTGGGAACAATTTTGAGCACCTTCCTTCTGGCTGCATCTCTAAACTTTTGAAGCTAGAAAGACTTTTATTGAAGTGTTGCCCAAGCCTGCAGTCATTGCCTAAGCTGCCACCAAATGTACATTATGTAAATGCAAGTGATTGTAGTTCAATGAAACCCTTATCAGATCCACAACAGATATGGGGTCACTTGGCATCCTTTGCCTTTGATAAGGTAACTCCAGGAAACGAAATTCCATCATCTTTTTTCTACCTAAACTATTTCGACCGGGACATACAATATTTAAAAGACAACTACATTTGGGCTGATTCTACTGTGTCAATTTCATTGGACTTAGCTCAAATTCGTCAACGGTATGATAAAAGTGAATGGTGGGGAATTTTGGTTTGCCTTGTCATAGAAGATGTCATGTCTTCACCTTCACAGGACTATCGTGTTGGTTGGATTTCAAAAGTTCCTACAATCAATAATATTTTGCGCCAGCTATGTCACAGGTTGTTGGAGCATGGATTCATTTCTGGGATACCAAATCATAAGTATCCTCATCTATTGGTTTTATATATCCCAGTTCCTTCATCTCGTTGGTCTTATGTCCAAGACAAGTTTCAATTGATATTTTTCAGTTCTAGTCTCAAGAGTAAGTTAGTGATTAAGAAATGTGGATGGCGCATATTATGTAAGGAAGATGCTGAAGCCTGGAGCAGAAAACTATCTGAATGCAACACTTCTTCTGCCAACCAATGTGTTCCAAGAGGCAATAGCTTACCTCCTTCTTTTGCATCTTGGAAATGGATAAGTAATCTCAAGGTTCCCCAACGTCGCAAGACTTTCCTCTTAGCAGTCCTCTGTGAACGTTTACCTACTAATGCAAAGTGCAGATTTTTCAGCTTGGAAGAAGGGACTAGGACTGTCCTCCATGTTTTAAGGGATTGTAGGAGAGCTCGTGCAATCTGGGGTCAAATGATTCCTCCTGAAGTGCATAATGAGTTTTTTTCAATGTCTCTTCATGATTGGATGCATAGGTTCCTTCGTAAGCCTTGGTTGGTTAATAACTCTAAGGACTATGATGCTGACTGCTTGAGGTTTACTGTCACTACTTGGCTGCTATGGGAGGATGGAAATAATTCAATCCCTGATGGAGGGTCTCTAACAGATGATGGATTGTATTCTCTGATTCAGTCTCTAGTACAAGAATATGCAAAGGTTTTGAATTTGAATGAGGGAGAGGGTAGTAGTAGTAGTAGTTCTGTTGTGAGTTCTCTCCCCCATAGCTCACCTCCCAAGATTTTTATTAAGTTGAATGTGGATGGCTATTGCATGGATAACCCTGGAAATGGTGGTTATGGTGGTCTCTTTCGTGATGTGGAAGGGAAGTGGCTTGGTGGATTCTATGGATTTCTGGGCTTTACAACAAATATGAAAGCTGAGCTTTATGCCATTTGTCAGGGTTTGATAGCAGCTTGGGATTTGGGTTACAGAAATGTGTTAGTTGAAACTGATTCCTTGGAAGCTGTACATCTCATTGAGGAGGCCAATATTGAGGAGCATCAAGGCTATGGTAGCTTGTTGGTTGACATACGCTCCCTCATGCAAAGAAATTGGTCCTTAAATTTGGTTCATTCTGTCAGGGAAGATAATGGCTGTGCAGACATTTTAGCAAAACTTGGAGCTGAGCAGCATGAGGTCTATTGCTTCCTGGCTTATCCACCACAGCAGCTTCAACAGGCATTGATGGCTGATGCCCTGAATGTTAAGCTTCCTTGCATGTAG 3165 0.3918 MLRQDLQNDIYKTLRISYDGLLDIEKAIFLDIACFFKGSTKEYVTQILQNCGLNPLIGIDVLIEKSLITYDGWHLGMHDLLQEMGRNIVLHESPNDVGKRSRLWSFKDVDQVLRNNRGTESIQAVVLNLPEPCEAHWNPEAFSKMSNLRLLMILNKLHLPLSLKCLPSGLKVLVWRDYPLESLPVGDHLDELVDLDMCHSKIKHLWRGTKFMGNLKTINLRNSKDLYITPDFTGIPNLEILDLEGCINLVEVHASLGLLKKLWYVSLEDCKNLKILPRKLEMDSLKRLILSGCTAVRKLPEFGESMTNLFMLALDQTSISELPSSVGYLTGLNILLLRDCKNIVYLPNTFSNLKSLRRLNVSGCSRFSKLPDNLNENEALECLNVSETAIREVPSSIVHLKNLTLLLFHGCKGLTSNSQSSLLPLGNIFGGLSSLKKLDLSYCNLHDGSIPDDLGCLSSLVTLDLSGNNFEHLPSGCISKLLKLERLLLKCCPSLQSLPKLPPNVHYVNASDCSSMKPLSDPQQIWGHLASFAFDKVTPGNEIPSSFFYLNYFDRDIQYLKDNYIWADSTVSISLDLAQIRQRYDKSEWWGILVCLVIEDVMSSPSQDYRVGWISKVPTINNILRQLCHRLLEHGFISGIPNHKYPHLLVLYIPVPSSRWSYVQDKFQLIFFSSSLKSKLVIKKCGWRILCKEDAEAWSRKLSECNTSSANQCVPRGNSLPPSFASWKWISNLKVPQRRKTFLLAVLCERLPTNAKCRFFSLEEGTRTVLHVLRDCRRARAIWGQMIPPEVHNEFFSMSLHDWMHRFLRKPWLVNNSKDYDADCLRFTVTTWLLWEDGNNSIPDGGSLTDDGLYSLIQSLVQEYAKVLNLNEGEGSSSSSSVVSSLPHSSPPKIFIKLNVDGYCMDNPGNGGYGGLFRDVEGKWLGGFYGFLGFTTNMKAELYAICQGLIAAWDLGYRNVLVETDSLEAVHLIEEANIEEHQGYGSLLVDIRSLMQRNWSLNLVHSVREDNGCADILAKLGAEQHEVYCFLAYPPQQLQQALMADALNVKLPCM. 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03020 1054 Gene3D - 895 1024 IPR036397 GO:0003676
Seca1g03020 1054 Gene3D Ribonuclease Inhibitor 301 531 IPR032675 -
Seca1g03020 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 308 417 IPR044974 GO:0006952
Seca1g03020 1054 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Seca1g03020 1054 Pfam Leucine Rich Repeat 192 210 IPR011713 -
Seca1g03020 1054 ProSiteProfiles Leucine-rich repeat profile. 459 480 IPR001611 GO:0005515
Seca1g03020 1054 SUPERFAMILY L domain-like 77 493 - -
Seca1g03020 1054 SUPERFAMILY Ribonuclease H-like 896 1025 IPR012337 -
Seca1g03020 1054 CDD RNase_H_like 898 1019 IPR044730 -
Seca1g03020 1054 Gene3D Ribonuclease Inhibitor 112 300 IPR032675 -
Seca1g03020 1054 SMART LRR_typ_2 457 480 IPR003591 -
Seca1g03020 1054 SMART LRR_typ_2 432 456 IPR003591 -
Seca1g03020 1054 SMART LRR_typ_2 353 377 IPR003591 -
Seca1g03020 1054 SMART LRR_typ_2 306 329 IPR003591 -
Seca1g03020 1054 Pfam Reverse transcriptase-like 899 1019 IPR002156 GO:0003676|GO:0004523
Seca1g03020 1054 SUPERFAMILY "Winged helix" DNA-binding domain 9 113 IPR036390 -
Seca1g03020 1054 ProSiteProfiles RNase H type-1 domain profile. 892 1023 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03020 Seca-Chr1 82891859 82895364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03020 20 408 WRKY Transcription Factor Family AT4G12020 37.037 9.00e-61 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03020 - - tpra:123888765 1587.01