Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02999 ATGACGAAACCCAAGGACTCCCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGGTGGGGCAGCTGCGAATCACAGTAATGGGAACATGCACAGGAATGTAAATTTGTTAAAGAGGAGGCGGTCTCGAAACAGTGACAACGAGGAGAAGAGTGGTTTTTATACGACACACATGACGGAGGAACGGTATCGATCAATGCTTGGAGAGCATATTCAGAAATATAAGAGGAGGTTTAGGGATACCTTGACTAGTCCTGCTCAAAATCAGGTTGCTGTTCCACTTGTGAAAAGTAACACAGGATTAAAAGCTCACAAGTCAGGGAATGATTGCAGGGGGGGATTACATGCTGCAGAGACTACACCTGAATGGATGAATGATTCCAATTCTCAGAAACCAGGAAACAACCGTGATGCAGATTTCATGCAGAAATTTGGAACTGATAGGATTATGTATGAACCTGCATACTTGGATATTGGGGATGGTATAACGTACAAGATTCCTCCAATTTATGATAAGTTGGCAGCAATGCTGAACCTTCCAAGCTTCTCCGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGCCTGCTGATAAAAGGTCTGGGAATAGAAACCGAGCAGGCATGGGGGAATCTATATCCCAATATGAATCACTTCAGGCACGACTAAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAGTATCTGATGTTGGTTTGAATTCCTCCATCCCGGAGGGGGCAGCTGGAAGCATAAAGCGCTCTATTTTGTCTGAGGGTGGTGTATTGCAAGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAGGTAAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATTTGGAAAGATTTGGGTAAATATTGTAAGAAGAGACATACCAAGGCATCATAGGAACTTTACTAATTTTCATCGAAAGCAGCTCACCGATGCCAAGAGGGTCTCCGATAGCTGTCAAAGAGAGGCATGCCCTATTAGAATGAAAGTTAGTAGATCACTTAAATGGACGAGGACTGCTAACATGCGCACCCGTAAACTAGCTAGAGACATGTTACTACTCTGGAAACGAATAGATAAGGAGATGGCAGAAGTGAGGAAAAGAGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCCAAGAGGCAGCAGCAAAGACTTAGTTTTCTTATACAACAAACTGAGTTGTACAGTCACTTTATGCAGAACAAGTCGAACTTACTATCTTCAGAAGCTTTACCCATGGTAGATGAAAATACAAATGACCAAAAAGAACCGATCAGCTCTTCAGATGTTGGGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGATGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTATAAGCAGAGAAGGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAAACTGATTCACTCCCACCAGAAGTTTCTGGGGCAACTAATATTGATTTGCAAACCCCCTCTACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTCGTCTCAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTAGTTGTTGCACCGGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCTTATTGGGGCGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTCGGGAAGCTAAATTTCATATTCTCATCACAAGCTACCAACTATTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTTCTGTTGACTGGTACACCAATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATCGGTTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGCGTTAAAAAAGATGTAATTTCTGAGCTGACTACAAAAACTGAGGTTACCGTGCATTGTAAATTGAGTACTAGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATCATGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGCTGTTTGAAAGGAGTGAGGGAAGCACATACCTGTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTAGAGGACGTATATTATTCTGGTGGTCTCAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATGATGCGAAGTTCTGAAACTCTTGGTTCAGCTGTTGGTCATGGTGTTTGCAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATAGATCTGTCTTTTCAGAAGATATATATGTTAAAAGTGGAAACTTCGGTTTTACACATTTGATGGATTTGTCTCCACAAGAGGTGACGTTTCTGGCCGCTGGCTCTTTAATGGAGCGACTACTATTTTCTATGATGAGATCAGAACAACAATTCATTAATGAAGTTGTAGACTTTCTTACGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGGAAAAGTGAGAACTATCACACGAATGTTATTGGTACCATCAAGATCTGAGACTAAGTTTTTTCAAAGAAGATTGCCAACTGGGCCCAGCCATACTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATATATCCCACAAAGCAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTCTAAAATGATTGAAGAATTACATGACCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTGTAATGGGCCTAGAAAGCCAGATGGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTGCCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGAATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTTTTGTTTGCTCAGATGACCAAGATGTTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCGTCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGGCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGACCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTAATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTCTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATTCGGTTAAATGAAGAAGGTGATGCTTCTCTGGAAGATCTATCAAATTCTTTAGCCCAGGATACTACAGATTATGATCTTTTCATGGACCCTGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCAAATTTCAATGCCAAAGAATTCGCAGAAGATGAATGAAGGTGATGAATTGGATGATGTCCACTTAAATAGTGATCTAGTGGGTCAGAAACCCAAGAGACCAAAGAGGATAAAGAAGAAAGTAAATGAAAAGTTTGAAGAGGCTTTTGCTGGGACAGGTACCGTGTTCCCAGAGCAAACCCAGTTTCAACCTCCCAGTGAATTCAGTGCTGGAGGTGCTAAAGTAGAATCAGCCAAGACACCTGAAGACTAG 4587 0.412 MTKPKDSLSYSTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQGGAAANHSNGNMHRNVNLLKRRRSRNSDNEEKSGFYTTHMTEERYRSMLGEHIQKYKRRFRDTLTSPAQNQVAVPLVKSNTGLKAHKSGNDCRGGLHAAETTPEWMNDSNSQKPGNNRDADFMQKFGTDRIMYEPAYLDIGDGITYKIPPIYDKLAAMLNLPSFSDIHVEDFYLKGTLDLGSLAEMMPADKRSGNRNRAGMGESISQYESLQARLKVMSASNSAHKFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERFGKIWVNIVRRDIPRHHRNFTNFHRKQLTDAKRVSDSCQREACPIRMKVSRSLKWTRTANMRTRKLARDMLLLWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLSFLIQQTELYSHFMQNKSNLLSSEALPMVDENTNDQKEPISSSDVGPDEEEDPEEAELKMEALKAAQEAVYKQRRLTSAFDTECLRLRQAGETDSLPPEVSGATNIDLQTPSTMPVASTVQTPELFKGRLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSTRQQAFYQAIKNKISLAELFDSNRGQLNEKRIMNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGLNPISYEIPKLVYQEMMRSSETLGSAVGHGVCRESFQKHFNIFRPENVYRSVFSEDIYVKSGNFGFTHLMDLSPQEVTFLAAGSLMERLLFSMMRSEQQFINEVVDFLTETIDDDPECSYLEKGKVRTITRMLLVPSRSETKFFQRRLPTGPSHTPFEALVVPHQDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYSKMIEELHDPWVKRLFVGFARTSDCNGPRKPDGPHHLIQEIDSELPVSQPALQLTHRIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMKGIRLNEEGDASLEDLSNSLAQDTTDYDLFMDPEGSKSSNKKRKAASDKQISMPKNSQKMNEGDELDDVHLNSDLVGQKPKRPKRIKKKVNEKFEEAFAGTGTVFPEQTQFQPPSEFSAGGAKVESAKTPED. 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02999 1528 CDD SF2_C_SNF 1194 1326 - -
Seca1g02999 1528 PANTHER HELICASE SRCAP-RELATED 61 523 - -
Seca1g02999 1528 ProSiteProfiles DBINO domain profile. 350 478 IPR020838 GO:0003677
Seca1g02999 1528 MobiDBLite consensus disorder prediction 1456 1476 - -
Seca1g02999 1528 FunFam Putative DNA helicase INO80 560 838 - -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 38 61 - -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 27 85 - -
Seca1g02999 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1385 IPR027417 -
Seca1g02999 1528 Gene3D - 1173 1458 IPR027417 -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 491 515 - -
Seca1g02999 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 771 IPR014001 -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 67 85 - -
Seca1g02999 1528 SMART helicmild6 1232 1315 IPR001650 -
Seca1g02999 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 816 IPR027417 -
Seca1g02999 1528 Pfam SNF2-related domain 603 890 IPR000330 GO:0005524|GO:0140658
Seca1g02999 1528 Coils Coil 425 464 - -
Seca1g02999 1528 Gene3D - 561 841 IPR038718 -
Seca1g02999 1528 FunFam DNA helicase INO80-like protein 1174 1425 - -
Seca1g02999 1528 Pfam DNA-binding domain 345 477 IPR020838 GO:0003677
Seca1g02999 1528 MobiDBLite consensus disorder prediction 1431 1445 - -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 1386 1407 - -
Seca1g02999 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1206 1390 IPR001650 -
Seca1g02999 1528 Pfam Helicase conserved C-terminal domain 1206 1315 IPR001650 -
Seca1g02999 1528 SMART ultradead3 584 779 IPR014001 -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 1420 1483 - -
Seca1g02999 1528 MobiDBLite consensus disorder prediction 1495 1528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02999 Seca-Chr1 82326257 82354235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02999 609 898 RAD5 or RAD16-like Gene Family AT5G43530 28.571 4.44e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca1g02999 SNF2_N 4.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02999 K11665 - gmx:100780615 2589.3