Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02973 ATGGTGATGGCGTGGGAAGATCTAACAGTAGAGGTCCCTAGTAGTAGAAGTAGTGTTCCAAACAAGAAGAAGTTGTTGCTTCATGGGATCACTGGTTTTGCGGAACCTGGTAGCATCATGGCCGTCATGGGTCCTTCTGGCTGTGGCAAAACCACCTTACTCGACTCATTGGCAGGAAGACATCCTACAAATGTTATAGTGACCGGTAGCATTCTAATAAACGGCCGGAAGAATAGAAGACATGATTGCAGACAAGTGTCTTATGTGGCTCAAGAGGAACTTTTCTTGGGAACTTTGACTGTAAGAGAAAGTCTCACATACTCTGCAAACATGAGGCTTCCTTCTAAAATGACCAAAGAAGAGATAAATGAAGTGGTGGAAGAAACAATAATGGAAATGGGTCTGGAAGATTGTGCAGATAACAACATTGGGAATTGGCATTTAAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGCTCTTGAGATTTTGACACAACCTCAAGTCCTACTTCTTGATGAACCAACTAGTGGGCTTGATAGTGCCTCAGCTTTCTATGTTATCCATGCTCTAAGCAACATAGCTTACAACAACTCAATCTTGGCAAGAGGAAAATGTCTCTCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAACTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTACTATCAAATGCTATATCATCATTTCCTTTTCTTCTTCTAATATCACTCTCCTCTGGATTAATTATTTACTCCATGGTGCAATTTCATCCGGGTATAACAAATTGTACATTTTTCTGCATCAACTTGTTCTGCTGCCTCTCTGTTGTTGAGAGCTGTGTCATGGTTGTAGCCTCATTGGTCCCCAATGTGTTGATGGGCATAGGAACAGCAACTGGTGTAATAATTTTTATGATGATGTCCTCCCAAATATTCAGACCACTACCTGACATCCCAAAGATATTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCAGCTTGGGCAGTGCAGGGACAATACAAGAATGACATGCTTGGGCTTGAATTTGATCCTCTGCTGTCTGGTTACCCAAAAGTTTCTGGAGAACAAGTCTTAACTACGGTATTTGGGGTTCCATTAAATCATGGAAAATGGTGGGACTTAACAGCATTGGTTACCTTATTATTAGTTCATAGATTGCTACTTTTCTTAGTACTTCGTTATATCAAAAGAATGAGATCATCGACACCCATTTTGTGGTTTTATGCCAAGGAAACTCTACGCTTTGGAGAAGGATGTTTACCCAGTACCAGTAACAAGTCATTCATCTTTTCCAAGGGAAAAGAAGTTTCTAATCCATTATCTTCTCAGCAGATTGTTATGTCCCCAAACTTTAACAATATATAA 1452 0.4029 MVMAWEDLTVEVPSSRSSVPNKKKLLLHGITGFAEPGSIMAVMGPSGCGKTTLLDSLAGRHPTNVIVTGSILINGRKNRRHDCRQVSYVAQEELFLGTLTVRESLTYSANMRLPSKMTKEEINEVVEETIMEMGLEDCADNNIGNWHLRGISNGEKKRLSIALEILTQPQVLLLDEPTSGLDSASAFYVIHALSNIAYNNSILARGKCLSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVLSNAISSFPFLLLISLSSGLIIYSMVQFHPGITNCTFFCINLFCCLSVVESCVMVVASLVPNVLMGIGTATGVIIFMMMSSQIFRPLPDIPKIFWRYPMSYLSFAAWAVQGQYKNDMLGLEFDPLLSGYPKVSGEQVLTTVFGVPLNHGKWWDLTALVTLLLVHRLLLFLVLRYIKRMRSSTPILWFYAKETLRFGEGCLPSTSNKSFIFSKGKEVSNPLSSQQIVMSPNFNNI. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02973 483 Pfam ABC transporter 31 179 IPR003439 GO:0005524
Seca1g02973 483 Pfam ABC-2 type transporter 200 360 IPR013525 GO:0016020|GO:0140359
Seca1g02973 483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 255 IPR003439 GO:0005524
Seca1g02973 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 203 IPR027417 -
Seca1g02973 483 Gene3D - 6 212 IPR027417 -
Seca1g02973 483 SMART AAA_5 36 240 IPR003593 GO:0016887
Seca1g02973 483 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 199 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02973 Seca-Chr1 81673692 81678877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02973 37 212 Calmodulin-binding Proteins AT2G36910 29.444 3.78e-11 63.9