Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02972 ATGGTGTTGGTCTGGGAAGATCTAACACTAACAGTTGGTCATAGTAACAGCTTTGGAAGAAACAAGAAGAAGTTGCTTAATGGGGTTACTGGATTTGCAGAACCTGGTAGGATCTTGGCCCTCCTCGGTCCTTCTGGCTGCGGCAAAACAACCCTGCTCGACTCCTTGGCTGATGACAATGTATATATGCTATGTTTTCTACTAAGGAAGACTTTCTGCAAATGTTGTAGTCTTATCAATGGGAAAAAGAGAAGCTTGTACTGCAGAGAAGTGTCTTACGTGGCTCAAGAGGAACTTTTCTTGGGAACTTTGACTGTAAAAGAAACCCTCACATACTCTGCAAACATGAGGCTTCCTTCTAAAATGATCAAAGAAGAGATAAATAAAGTGGTGGAAGAAACAATAATGGAAATGGGTCTGGAAGATCGTGCAGATAACAATATTGGGAATTGGCATTTAAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGCTCTTGAGATTTTGACACAACCTCAAGTCCTACTTCTTGATGAACCAACTAGTGGGCTTGATAGTGCCTCAGCTTTCTATGTTATCCATGCTCTAAGCAACATAGCTTGTAATGGAAAGATAGTTATTTGTTCCATTCACCAACCAAGTAGTGAAACTTTTAATCTTTTTGATGATTTGCTTTTGCTCTCATGTGGGGAAACTGTTTATTTTGGAGAAGCAAAGATGGCTCTAAAGTTTTTTTCTGATGCAGGGTTCCCCTGTCCTATAAGAAGGAATCCTTCAGATCATTTCCTTTTGTGTATTAATTTGGACTTTGACTTGATTACTACAACACTAGCAAAACCACAGTTAAGTCTGTTAATGTCATCAAATTCATCAATGGGAATAAGAACAGCAGAGATTCGAGGGAAGCTCATTGAGAGATACAAAAGTTCAGAGCTAATGAGCAATACAAGAAGAAGAATTCAACAACTCAAACCCAATCTGAGAGATGCAGAGGTGCAGGAAGAGCAAGTAATTGAGTCCAATGTAAGGAGCAGTACCACCTGGTGGAAGCAACTTTGCACATTGACCAAGCGATCTTTCCTAAACATGACTAGGGACTTGGGATACTATTGGCTGAGGATAATATTTTACACATTGGTAGCAATCTGTGTTGGCACCCTTTTCTTTCATATTGGCACAGACAACTCCTCAATCTTGGCTAGAGGAAAGTGTGTATCATTCATCTATGGCTTCATGATCTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTTCTATCAAACATTATTTCATCATTCCCTTTCCTTCTTCTAATATCACTCTCCTCTGGAATAATTATTTACTCCATGGTGCAATTTCATCCGGGTATAACTAATTGTACATTTTTCTGCATCAACTTATTCTGCTGCCTTTCTGTTGTTGAGAGCTGCATCATGGTTGTAGCCTCAGTGGTCCCCAATGTGTTGATGGGTATAGGAACTGGAACTTGTGTAATAGGGCAGTACAAGAATGACATGTTGGGGGTTGAATTTGATCCTCTGTTACCTGGGGAACCAAAAGTTAGTGGAGAACAAATCCTATCATTTGTGTTTGGGGTTCCATTGAATCATGACAAATGGTGA 1689 0.3979 MVLVWEDLTLTVGHSNSFGRNKKKLLNGVTGFAEPGRILALLGPSGCGKTTLLDSLADDNVYMLCFLLRKTFCKCCSLINGKKRSLYCREVSYVAQEELFLGTLTVKETLTYSANMRLPSKMIKEEINKVVEETIMEMGLEDRADNNIGNWHLRGISNGEKKRLSIALEILTQPQVLLLDEPTSGLDSASAFYVIHALSNIACNGKIVICSIHQPSSETFNLFDDLLLLSCGETVYFGEAKMALKFFSDAGFPCPIRRNPSDHFLLCINLDFDLITTTLAKPQLSLLMSSNSSMGIRTAEIRGKLIERYKSSELMSNTRRRIQQLKPNLRDAEVQEEQVIESNVRSSTTWWKQLCTLTKRSFLNMTRDLGYYWLRIIFYTLVAICVGTLFFHIGTDNSSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVLSNIISSFPFLLLISLSSGIIIYSMVQFHPGITNCTFFCINLFCCLSVVESCIMVVASVVPNVLMGIGTGTCVIGQYKNDMLGVEFDPLLPGEPKVSGEQILSFVFGVPLNHDKW. 563
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02972 562 Pfam ABC-2 type transporter 353 520 IPR013525 GO:0016020|GO:0140359
Seca1g02972 562 Pfam ABC-2 type transporter 213 268 IPR043926 GO:0140359
Seca1g02972 562 Pfam ABC transporter 27 184 IPR003439 GO:0005524
Seca1g02972 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 246 IPR027417 -
Seca1g02972 562 Gene3D - 8 248 IPR027417 -
Seca1g02972 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 2 522 - -
Seca1g02972 562 SMART AAA_5 35 232 IPR003593 GO:0016887
Seca1g02972 562 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 256 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca1g02972 Seca-Chr1 81644573 81649054 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02972 33 217 Calmodulin-binding Proteins AT2G36910 29.231 3.53e-12 67.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02972 - K05681 gmx:100802207 798.89