Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02971 ATGTTGCCTCCAACAATGGAGTTGCAGGGTACTAATGCAGTGGATACCAAGAGGGGGGTATGTTTGGTTTGGGAAGATTTGACAGTAGTGGCACCCAATTTTAGCAGTAGACCAGAAAGGAAACTGTTAAATGGGTTAAGTGGTTATGCAGAACCCAACCGGATTATGGCAGTCATTGGTCCTTCAGGATCTGGGAAAACAACTTTACTTGATGCCCTGGCTGGAATACTGCCCCCCAATGTTAGCATGACTGGAAATGTACTACTCAATGGGACTAAAAGAAGTACAGGCTGTAGAGATATTTCCTATGTTACTCAAGAAGATTATTTCTTAGGAACACTAACAGTGAGAGAAACCCTCACATATGCTGCTTATTTGAGACTTCCGGCTAATAAGACTAAAAATGAGATTGATAAGGTGGTAACTAAAACATTGGATGAAATGGGTCTACAAGATGTCGCAAATAGTAGACTTGGGAATTGGCATTTGAGAGGCATAAGTAATGGAGAGAAAAGAAGGCTTAGCATAAGCGTTGAGCTCTTAACTCAACCTCATATAATGTTTATGGATGAACCAACAAGTGGATTGGATAGTGCTGCTGCTTTCTATGTGATATTATCTCTAAGAAGCATAGCCCATGATGGACGAATAGTTATTTGCTCTATTCACCAACCAAGTAGTGAAGTTTTCAGGCTTTTTGATGATTTGGTCATCCTTGCAGGAGGTGAAACTGTATATTTTGGGGAAACAACTATGGCTATAAAGTTCTTTGCTCATGCAGGCTTTCCATGTCCAACAAGGAAAAATCCTCCAGAGCACTTCCTTCGATGTGTTAGCCCAGAGTTTGATAGGGTTGCAATCTTTATGCTATCCAAAATTGTCAGTGAAGCATCATCTTCAAGTTCTCTACAGAATATGACAACAGAGGAGATTAAATCAAAACTTATCACAAACTACAAGAATTCCACACATTCAGTAGATGCAAGAAACAAAATCAAAGAAATTAAACTAAGTGAAGAGTCTTTCATTGGGAGAAAATATGAGATTAGCAAGATGAAGCAACTACGCACATTGACAAATAGATCATTCCTGAATATGAATAGAGACATTGGTTACTACTGGTTAAGGATTTTATTCTTTATCTTGGTATCAGTGAGTGCTGGTTTTCTTTATTTCAACATAGGATCAAGTAATGAAGCAATCTTGTCGAGAGGCAAATTTGATGTATTCATCTATGGCTTCATGATCTTTGTGTGTGTAGGAGGGTTACCTTTTTACCTTGAGGAATTAAAGGTACATAGAGCATTTTAG 1311 0.3844 MLPPTMELQGTNAVDTKRGVCLVWEDLTVVAPNFSSRPERKLLNGLSGYAEPNRIMAVIGPSGSGKTTLLDALAGILPPNVSMTGNVLLNGTKRSTGCRDISYVTQEDYFLGTLTVRETLTYAAYLRLPANKTKNEIDKVVTKTLDEMGLQDVANSRLGNWHLRGISNGEKRRLSISVELLTQPHIMFMDEPTSGLDSAAAFYVILSLRSIAHDGRIVICSIHQPSSEVFRLFDDLVILAGGETVYFGETTMAIKFFAHAGFPCPTRKNPPEHFLRCVSPEFDRVAIFMLSKIVSEASSSSSLQNMTTEEIKSKLITNYKNSTHSVDARNKIKEIKLSEESFIGRKYEISKMKQLRTLTNRSFLNMNRDIGYYWLRILFFILVSVSAGFLYFNIGSSNEAILSRGKFDVFIYGFMIFVCVGGLPFYLEELKVHRAF. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02971 436 CDD ABCG_EPDR 19 248 - -
Seca1g02971 436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 266 IPR003439 GO:0005524
Seca1g02971 436 Pfam ABC-2 type transporter 223 279 IPR043926 GO:0140359
Seca1g02971 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 262 IPR027417 -
Seca1g02971 436 SMART AAA_5 52 242 IPR003593 GO:0016887
Seca1g02971 436 Pfam ABC transporter 43 194 IPR003439 GO:0005524
Seca1g02971 436 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 17 434 - -
Seca1g02971 436 Gene3D - 19 260 IPR027417 -
Seca1g02971 436 Pfam ABC-2 type transporter 354 428 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02971 Seca-Chr1 81550910 81560083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02971 33 235 Calmodulin-binding Proteins AT2G36910 26.941 9.11e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02971 - K05681 aip:107646291 606.675