Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g02958 | ATGGAGGGATCAACAATAAGTGATCATAAGGGGTTGTTGGAATGTGCAAGAAAGTGCAGTCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGATGATGTGATATCATGGAATGTTGAAGGAACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTTCCAACTCTCTTCAAACATAGCAACTTCTCAAGTTTTGTGCGCCAGCTTAATACCTATGTAGGGTTTCGTAAAGTTGCAACAAACAGATGGGAATTTTGCAACGAGAGGTTCAGGAAAGGTGAAAGAGAAGTTTTATCGGAGATTCGGCGAAGAAAAGCTTGGAGCAGCAAACAACAGAAACAACAGCAAGTTGACTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCTTCGGGTAATCTTGTGGATGAAAACAAGCGACTACAAGAAGGAGAATGGGGATTTGAATTCTGA | 486 | 0.4444 | MEGSTISDHKGLLECARKCSPPPFLLKTYMLVEDPATDDVISWNVEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYVGFRKVATNRWEFCNERFRKGEREVLSEIRRRKAWSSKQQKQQQVDSDEDQRSSSTSSSSGNLVDENKRLQEGEWGFEF. | 162 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g02958 | 161 | Gene3D | - | 16 | 115 | IPR036388 | - | |
Seca1g02958 | 161 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 20 | 153 | IPR027725 | - | |
Seca1g02958 | 161 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Seca1g02958 | 161 | SUPERFAMILY | "Winged helix" DNA-binding domain | 20 | 114 | IPR036390 | - | |
Seca1g02958 | 161 | SMART | hsfneu3 | 20 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g02958 | 161 | PRINTS | Heat shock factor (HSF) domain signature | 24 | 47 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g02958 | 161 | PRINTS | Heat shock factor (HSF) domain signature | 62 | 74 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g02958 | 161 | PRINTS | Heat shock factor (HSF) domain signature | 75 | 87 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g02958 | 161 | MobiDBLite | consensus disorder prediction | 115 | 161 | - | - | |
Seca1g02958 | 161 | Pfam | HSF-type DNA-binding | 24 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Seca1g02958 | 161 | FunFam | Heat stress transcription factor B-4 | 16 | 115 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g02958 | Seca-Chr1 | 81200671 | 81203976 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g02958 | 21 | 153 | HSF | AT2G41690 | 62.338 | 7.70e-57 | 176 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Seca1g02958 | HSF_DNA-bind | 5.1e-29 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g02958 | K09419 | - | qsu:112013936 | 202.986 |