Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02958 ATGGAGGGATCAACAATAAGTGATCATAAGGGGTTGTTGGAATGTGCAAGAAAGTGCAGTCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGATGATGTGATATCATGGAATGTTGAAGGAACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTTCCAACTCTCTTCAAACATAGCAACTTCTCAAGTTTTGTGCGCCAGCTTAATACCTATGTAGGGTTTCGTAAAGTTGCAACAAACAGATGGGAATTTTGCAACGAGAGGTTCAGGAAAGGTGAAAGAGAAGTTTTATCGGAGATTCGGCGAAGAAAAGCTTGGAGCAGCAAACAACAGAAACAACAGCAAGTTGACTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCTTCGGGTAATCTTGTGGATGAAAACAAGCGACTACAAGAAGGAGAATGGGGATTTGAATTCTGA 486 0.4444 MEGSTISDHKGLLECARKCSPPPFLLKTYMLVEDPATDDVISWNVEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYVGFRKVATNRWEFCNERFRKGEREVLSEIRRRKAWSSKQQKQQQVDSDEDQRSSSTSSSSGNLVDENKRLQEGEWGFEF. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02958 161 Gene3D - 16 115 IPR036388 -
Seca1g02958 161 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 153 IPR027725 -
Seca1g02958 161 MobiDBLite consensus disorder prediction 131 148 - -
Seca1g02958 161 SUPERFAMILY "Winged helix" DNA-binding domain 20 114 IPR036390 -
Seca1g02958 161 SMART hsfneu3 20 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02958 161 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02958 161 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02958 161 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02958 161 MobiDBLite consensus disorder prediction 115 161 - -
Seca1g02958 161 Pfam HSF-type DNA-binding 24 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02958 161 FunFam Heat stress transcription factor B-4 16 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02958 Seca-Chr1 81200671 81203976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02958 21 153 HSF AT2G41690 62.338 7.70e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca1g02958 HSF_DNA-bind 5.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02958 K09419 - qsu:112013936 202.986