Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02957 ATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGGTTTTTGGAAAGAACATTGTATCGGATATTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGGGAGCATTTAGAACTATTTGCCATATTAAAGGGTGTGGAGGAAGACTCGCTGGAGGGTGTTGTCTCTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATTAACAGTCTTGTGAGAGCTCTTTCTGGTGGCATGAAAAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATTGTTCTTGACGAACCTACAAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAAAAGGGCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCACTATGGAGTTGGTTATACTCTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATTGCTGCTGATATAGTATACCGTCATGTTCCATCAGCAACTTGTGTAAGCGAGGTCGGAACTGAGATTTCCTTCAGGCTTCCTATGGCATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAGCCAATCTCGAACATGGAAATAAGTGGCAATGGTGACAAAGACAGTCATGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTTTTCTTGAGAGTTGCAGGATGTGACTATGACGAAGTTGAATGCTTTGAAGAAAATAAACCCTCCCTTATATCAGATTCTGTGACTTCTCTTCCTTATAATGACTGTCCATCAACAAAAATATGTTATCTTAAAGTGTTTGGAAATTATAAGAAGATTCTTGGCTTCATGTCTACCATGGTGGGAAGAGCTTGTCACTTAATTTTTGCTACTGTTATTAGTTTCATCAACTTCTTGGGTATGCAGTGTTGTAGCTGTTGTCTCCTTACTAGGTCAACATTTTGGCAACATTCTAAAGCTTTATTCATTAAGAGAGCAATATCTGCTCGGAGAGATCACAAAACGATTATTTTCCAGCTAATGATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTTGAGCTCAAGCCACATCCAGATCAGCAGTCACTGACGCTTTCAACTTCTTATTTTAATCCTCTGTTGAGTGGTGGGGGTGGGGGAGGTCCAATTCCTTTTAATCTATCTCTTCCAATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAAAGGTGCAAACCAAGCTCATACAAGTTCCCCAATTCAGAAAAGTCATTAGCTGATGCAGTGGAAGCAGCAGGCCCAACTCTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAATAATGATGGAAGTTTAGGCTACACTGTGTTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACTCATAACATGAATATGACAATTCAGACACGCAACCATCCTCTACCAATGACACAAAGTCAGCGCTTGCAACGTCATGACCTGGATGCCTTCTCTGCTGCTATCATTGTCAATATTGCCTTTTCTTTTATCCCTGCCTCATTTGCTGTTTCAATTGTCAAGGAACGTGAAGTGAAAGCGAAGCACCAACAACTAATCAGCGGGGTTTCAGTCCTTTCATATTGGGCTTCTACATTTATGTGGGACTTTGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATACTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACGATCGTCATGCTTTTGGAATATGGACTTGCAATTGCATCGTCAACATATTGCCTTACATTTTTCTTTTTCGACCATACCATGGCTCAGAACGTGGTTCTCCTGGTCCACTTTTTTACTGGATTGATATTGATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGTGCTTCCATTTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTTTGTTGACACTCGCACTTGAAATTTTTCCTTCTCTCCAATTGACTTCATTCATGATAAAGAAATGGTGGCAGAAAATGAATATCTTCCAGCATAATACTACTTATCTGGAACCTCTATTAGAATCAACCCCAGAAAATGTTGTTATGGACCTCGATGAAGATGTAGATGTGAAAACAGAAAGGAACAGAGTACTTTCAGGTTCCCTTGACAATTCTATTATCTACTTGCGCAATCTTCGTAAGGTGTATTCTGAAGGAAAGTATCATGGGAAAAAAGTTGCTGTCGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGGACAAATGGAGCTGGAAAGACAACGACACTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACAGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCCTGTAAATATATTGGATATTGTCCACAGTTTGATGCTCTACTGGAATTCTTGACTGTCCAAGAGCATCTGGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTGCACAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTCAGTGGAGGGAATAAAAGGAAACTTTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCGGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACGAGAATAGGGATTATGGTTGGTGGACGGCTAAGATGCATTGGAAGTCCACAACATCTAAAAACAAGATTTGGGAATCATCTAGAACTAGAGGTGAAACCTACTGAAGTGAGCTCTGTGGACTTACAAGCACTCTGCCAAGCTATTCAGGAAATACTTTTGGATGTCCCTTCTCAACCTAGAAGCTTACTTAACGACCTTGAAATTTGCATTGGGGGCATTGACTCTACCTCAGGAAATACCTCTGTTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGACGCTGGCTTGGTAATGAAGAAAGAGTGAAGACTCTAATCTCTTCACCTGTCTATGATGGAGCTTCTCATGAACAGTTATCAGAACAATTATTTCGAGATGGTAGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAAGAAAAATTCTCAGAAATTGATTCATTTATTCTCTCGGCATTTCGGGGAGCAAGATGTCAAGGGTACAATGGTTTGAGCATCAGATACCAGTTACCATATGATGAGGATTTTTCCCTGGCAGATGTTTTCGGACTTCTTGAAGGAAACAGAAATAGAATAGGGATTGCAGAGTACAGCATCAGCCAATCAACTCTGGAGACAATATTTAATCATTTTGCAGCTAATTCATAA 3852 0.4021 MLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEDSLEGVVSNMADEVGLADKINSLVRALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAADIVYRHVPSATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPISNMEISGNGDKDSHGIESYGISVTTLEEVFLRVAGCDYDEVECFEENKPSLISDSVTSLPYNDCPSTKICYLKVFGNYKKILGFMSTMVGRACHLIFATVISFINFLGMQCCSCCLLTRSTFWQHSKALFIKRAISARRDHKTIIFQLMIPAVFLFIGLLFLELKPHPDQQSLTLSTSYFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRCKPSSYKFPNSEKSLADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNMNMTIQTRNHPLPMTQSQRLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFMWDFVSFLFPASFAILLFYIFGLDQFVGGVSLLPTIVMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLVHFFTGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEIFPSLQLTSFMIKKWWQKMNIFQHNTTYLEPLLESTPENVVMDLDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAACKYIGYCPQFDALLEFLTVQEHLELYARIKGVPDCTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQEILLDVPSQPRSLLNDLEICIGGIDSTSGNTSVAEISLTREMIGLIGRWLGNEERVKTLISSPVYDGASHEQLSEQLFRDGSIPLPVFSEWWLSKEKFSEIDSFILSAFRGARCQGYNGLSIRYQLPYDEDFSLADVFGLLEGNRNRIGIAEYSISQSTLETIFNHFAANS. 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02957 1283 SMART AAA_5 887 1074 IPR003593 GO:0016887
Seca1g02957 1283 FunFam ABC transporter A family member 1 846 1100 - -
Seca1g02957 1283 CDD ABC_subfamily_A 1 174 - -
Seca1g02957 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 857 1095 IPR003439 GO:0005524
Seca1g02957 1283 Pfam ABC transporter 879 1021 IPR003439 GO:0005524
Seca1g02957 1283 ProSitePatterns ABC transporters family signature. 994 1008 IPR017871 GO:0005524|GO:0016887
Seca1g02957 1283 Pfam ABC transporter 1 116 IPR003439 GO:0005524
Seca1g02957 1283 ProSitePatterns ABC transporters family signature. 88 102 IPR017871 GO:0005524|GO:0016887
Seca1g02957 1283 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 383 794 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca1g02957 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1086 IPR027417 -
Seca1g02957 1283 Gene3D - 849 1099 IPR027417 -
Seca1g02957 1283 Gene3D - 1 189 IPR027417 -
Seca1g02957 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 189 IPR027417 -
Seca1g02957 1283 CDD ABC_subfamily_A 857 1083 - -
Seca1g02957 1283 Pfam ABC-2 family transporter protein 385 787 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02957 Seca-Chr1 81151527 81195638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02957 8 189 Calmodulin-binding Proteins AT2G36910 25.789 2.02e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02957 K05643 - gmx:100803263 2337.38