Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02952 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGTCCGCGGAGACTTCGGAAGCAGCGATGGCGAACGATCAGCTTTTACTGTACCGAGGGTTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCTTGTGCCGCCGGCAAGCGGAGCTCCATCTACCGCGGTGTCACCAGACATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAACAAGGTTCGGTTCTTAGCGTTTTTAAATTTCAGGTTCAAAGTTTTGTGTGA 324 0.4846 MASSSSDPGKSAETSEAAMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGSVLSVFKFQVQSFV. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02952 107 Gene3D AP2/ERF domain 59 102 IPR036955 GO:0003700|GO:0006355
Seca1g02952 107 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 94 - -
Seca1g02952 107 Pfam AP2 domain 59 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02952 Seca-Chr1 81090100 81091025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02952 20 92 AP2-EREBP Transcription Factor Family AT2G41710 94.521 6.09e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g02952 AP2 7.1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02952 K09285 - gmx:100786651 186.808