Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02946 ATGGATGACCACTGTGATTCACAGATTCCATCAGATATTATTCCTAGTGGGTGTGAGGAAAACTTGACCTCACATTCACTACTAGAATGTAAGCGTGAAATCATTGATTTCAATGAAAATGATGATGATGATTTTCCTGTGCCACAGGCTGGGATGGTATTTAGTTCAGAGGATAAGGCCAGATCCTATTACACATCATATGCCAACCGATTAGGCTTCCGGATCATGACTAGAAGCTCAAAAAAGAGACATGATGGCAGAGTTAAGTATTTAATACTTCAATGTACTGGAGGAGTTAGAAGATGTTATAATGGAATAAGTATTTCTACTGCATCATGGAAACAGAATTGTGAAGCCAGGATCAATGTCTCATTGTGTAAAGATGGGATCTACCAAATTCGTAAAGTTGTGCTCAGTCACAATCATGAAGTGAGGTGTCCAGTACTACTCTTAAAGGATATTGAAATGTGTGGTGAAAGGGCGTTGGATCGAAAAAATATTGACATGTGTGTTAAGAGGACATCTGACCAAAATAATTGCAAAAACAAGCTTCAAAAAGAAAGGCATTTGATCGGGGAGGATGGAGATGGTGAAGCCCTGCAAAAGTATTTGGCGAGGATGCAAAAACAAGATAGCAACTTCTTCTATGCAATTGACTTGGATGATTTCTTCAATGTGAGAAATGTATTTTGGGCTGACGGAAGGAGTAAAGCTGCATATGAATCATTTGGTGATGTGGTGACGCTTGATACTACATATCTCTTTAATCAATACAAAGTGCCACTTGTAACTTTTGTTGGAGTAAACCATCATGGCCAATCTGTACTTTTTGGTTGTGGGTTGTTGCCGCGTCAAGACTTGGAGTCATTTGTTTGGCTGTTTCAATCATTCCTAAATTGCATGTCTGGTGTACACCCACGAGGAATTATAACAGATCATTGCAATGCCATGCTAAAAGCGATTGAAACTGTGTTCCCCTCCACTCGACATTGTTGGTGTGTATCGAATATAATGAAAGAGCTTCCCCAAAAAATTCATGGATATGAGAAGTACAAGTCAATAGGAGATCATTTGCAGAATATTGTATATGATACACTCACAACAGATGAATTTGAGAGGAATTGGGAGAAGATTATGAAGGATTTTGGCCTTGAAGAGGATAAGTGGTTGAAGGAGTTGTTCCTTGAGAGACATCGGTGGGTTCCTTCTTTTGTAAAAGGTGATTTTTGGGCTGGAATGTCTGTTAACCAACCTACTGAAAGCATACATGCATTTTTTGATGGACATGTAAACCAGCACACAACTTTGAAGCTATTTGTTGATCAGTATGATAGTGCTTTGCAATACAAGGCAGAGAAGGAGTATATAGCTGACGTACATTCATCTTGTAGCATTCAGTCTTGTGCTACCAAATCTCCAATTGAACGGCAGTTTCAATCTGCATACACAAATGCAAAATTTCAGGAGGTTCAAGATGAGTTTGTTGGAAAGGCTGATTGTAATGTTTCTGTTGCCTGTGACGATGGCTCTATTTGTCACTATAAAGTCATTGAGGATGTGATAATAGAGGATAAGCCTAAGGAATGTGTGGTTGAAGTCACATATAACAGGGTAACTCATGATGTTAATTGCAATTGCCGCTCGTTTGAGTTCAGAGGGATACTTTGTAGGCACTCACTTGCCGTACTGTCACAAGAGAGAGTGAAGGAGGTCCCTTGTAAATATATATTAGATAGATGGAGGAAAAATATGAAGAGGAGGTATGTTCATGTCAAAACCAGCTATGGTGTTCAGCATCTTAAACCTCATATGCAAAGGCTTGAATTGTTATGCAATCAATTCAATAGCATTGCTGATGCCGCTGCTGAATTTGAGGAAACAAGTTCTTTTGTGAAGGTTACTCTTTGTAACTTGAAGGAGAAACTTGAAACGTGGGCAACCCATTTGAGAAATTCATCTCAGGTGGATGTAGAGGAAGCTCAGTACATAAGCTCACCCGATGGTGTTTAG 2010 0.3925 MDDHCDSQIPSDIIPSGCEENLTSHSLLECKREIIDFNENDDDDFPVPQAGMVFSSEDKARSYYTSYANRLGFRIMTRSSKKRHDGRVKYLILQCTGGVRRCYNGISISTASWKQNCEARINVSLCKDGIYQIRKVVLSHNHEVRCPVLLLKDIEMCGERALDRKNIDMCVKRTSDQNNCKNKLQKERHLIGEDGDGEALQKYLARMQKQDSNFFYAIDLDDFFNVRNVFWADGRSKAAYESFGDVVTLDTTYLFNQYKVPLVTFVGVNHHGQSVLFGCGLLPRQDLESFVWLFQSFLNCMSGVHPRGIITDHCNAMLKAIETVFPSTRHCWCVSNIMKELPQKIHGYEKYKSIGDHLQNIVYDTLTTDEFERNWEKIMKDFGLEEDKWLKELFLERHRWVPSFVKGDFWAGMSVNQPTESIHAFFDGHVNQHTTLKLFVDQYDSALQYKAEKEYIADVHSSCSIQSCATKSPIERQFQSAYTNAKFQEVQDEFVGKADCNVSVACDDGSICHYKVIEDVIIEDKPKECVVEVTYNRVTHDVNCNCRSFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNMKRRYVHVKTSYGVQHLKPHMQRLELLCNQFNSIADAAAEFEETSSFVKVTLCNLKEKLETWATHLRNSSQVDVEEAQYISSPDGV. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02946 669 Pfam MULE transposase domain 246 339 IPR018289 -
Seca1g02946 669 ProSiteProfiles Zinc finger SWIM-type profile. 529 567 IPR007527 GO:0008270
Seca1g02946 669 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 644 IPR031052 GO:0006355
Seca1g02946 669 SMART 26again6 542 569 IPR006564 GO:0008270
Seca1g02946 669 Pfam SWIM zinc finger 543 564 IPR007527 GO:0008270
Seca1g02946 669 Pfam FAR1 DNA-binding domain 62 144 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02946 Seca-Chr1 80852056 80855041 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02946 MULE 4.6e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02946 - K17604 gmx:102660547 940.643