Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02939 ATGGCTGAATCATTTGTCTTCCACGTTGCTGAATCACTGCTAGGGAAGCTTGCTTCTTATGCTTATGAAGAAGCTTCTCGAGCCTATGGTGTGTATGATGATATGCAACAGATCAAGGACACTTTGTCAATTGTCAAAGGTGTGCTATTGGATGCTGAGGAGAAGAAGGACCAAAAGCATGGCTTGCGTGAATGGCTCAGACAGATTCAACATATCTGCTCCTATGCTGAAGATGTATTGGATGGATTTGAGTGCCAAAACATGCAAAAGCAACTTGTCAAAGCTTCTGGCAGCACCAGGATGAAGGTAGGCCACTTCTTTTCTACACACAATCCTCTTGTTTTCCGTCTTAAGATGGCTCGTCAAATCAAAGACATTAGGGATAGATTGGATAAGGTAGCAGCTGATGGAACCAAGTTTGGCCTTGAGAGAGTTGATGTTGATCCCAGGCTTAGTGTGCAAATGAGAGAAATGACTCACTCTCATGTTGATGCTTTAGATGTGATAGGAAGGGAGAATGAAAGGGAAGAAATTATCCAGCTTTTGATGCAACCCCACCCTCGTGGGGATGGTGATGGTGATAGAAGTCTGTGTGTTATTCCCATAGTGGGAATTGGGGGCTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGGTGGATGAACTTTTCCAATTGAAGATGTGGGTATGTGTCTCTGATGATTTTGACGTTAGGCAAATAATTATTAAAATCATAAACTCTGCTTTAGCTTCAGCTCCAGCCACTGCTCTTGCTCACCAAGAAAACATTAACAACTTAGATATTGAACAGCTACAAAGTCGTCTTCGATATAAACTTTCTGGACAAAAGTTTTTGCTTATCTTAGATGATATATGGAATGAGGATCGTGCAAAATGGATTCAGTTGAAAGATTTAATAAAGGTTGGTGCAATAGGAAGCAAAATATTAGTGACAACACGTAATAATTCAATTGCTTCAATGATGGGCACTGTTCCCTCGTATGTTTTAGAAGGACTTTCTCTGGAGAACTGTTTATCTTTGTTTGTCAAATGGGCATTTAAGGAAGGAGAAGAAGAAAAATATTCAAATCTAATGGAGATAGGAAAAGAAATTGTGAAAAAGTGTCGAGGGGTTCCACTAGCAGTGAGAACATTAGGAAGTTCCCTGTTCTCAAAATTTGATTTAGATAAGTGGAAATTTGTAAGAGACTCTGAGCTATGGAGTATAAGGCAAAATAGAGATGACATTTTACCTGCTCTTAAGTTAAGCTACGATCAAATGCCATCTCATTTAAGGCACTGTTTCACATACTTCTCTCTTTATCCCAAAGATTTTGGCTTCACTAGTGTTCAAATTACTAAACTCTGGACAGCACTTGGATTAATTCACTCCCAGGATGGAAGTCAAAAGCTAGAGAATATTGCAAATGAATATATAGATGAGTTACATTCAAGATCATTTCTTCAGGATTTTGAGGACTTTGGCCACTTTTACTATTTCAAAATACATGATTTGGTTCATGATCTTGCACTGTATGTTGCGAAAGAGGAGTGTGTAGTTGTAGACTCCCAAACTCAGAATATACCTGAGCAAGTTAGGCATTTATCAATTGTTGAAAATAATTCACTTGCCCATGCTTTGTTCCCGAAGTCCAGTAGTGTGAGAACTATACTATTTCCCATTGAAGGAGTGGGTCTTGACAGTGAAACTGTTTTGGATACATGGGTGTCAAGATACAAGTACTTACGGGTTTTAGATTTAAGTGATTCTTCATTTGAGGCTCTATCTAATTCAATTGCTAAATTGGAGCACCTGCGAGTTCTCAATCTTTCTAATAACTGCAAGATCAAAGGACTTCCTCCTTCTATATGCAAACTCCAAAATTTGCAAGTTTTGTCACTCAGTGGATGCAAGAAGCTTGAAACATTGCCTAAAGGATTAGGGAAGCTGATCAACCTTCGACAATTGTATATAACCACAAATCAATCTGTTCTGTCCCTGGATGAACTTGCAAGCTTGAGCAATCTTCAAACTTTGAGTTTTGAGTATTGTAACAATTTGCAGCATTTGATCGGAGGGAAACAGCTCACTTCCCTTGAAGCACTGATTGTTCAATCATGTGGGAGCCTTGTGTTCATTCCTCTTGATATTCTCCCTAAGTTAGAGGCTCTATTAGTTACAGGCTGTGGTATGCTGGAACTGTCAGAACACTCAGAGAATCGCGAAATTATGGCATTCACAATCAATAAATTGAGGCTGAAATTTCTTCATCTTGAGTATTTTCCAAGGCTAGAGACATTACCTGAATGGATTGAAGGAGCTGCAGAGACTTTACAGACCTTGATAATTATAAACTTTCCTGAGCTTTGGATGCTTCCTGAGAGTCTGACAAGAATGACTCATCTTAAGATGCTCCATATTTCTAACTGTCCTCAACTGTATTATCTTCCAAGTGGCATGAAACGCCTTACTACCCTTGGTACTTTGACCATAGATGGTTGTCCTGTATTGGGTCGAAAATGTCATCCAAAATCTGGTGAGTACAGGCACATGATTGCTCACATCAAACGCGTTTCCATTGGAGAACCAAAAGAAGAGGAGGAACCACTCTCCCAAAATGAAAGCATCAACTGA 2646 0.3946 MAESFVFHVAESLLGKLASYAYEEASRAYGVYDDMQQIKDTLSIVKGVLLDAEEKKDQKHGLREWLRQIQHICSYAEDVLDGFECQNMQKQLVKASGSTRMKVGHFFSTHNPLVFRLKMARQIKDIRDRLDKVAADGTKFGLERVDVDPRLSVQMREMTHSHVDALDVIGRENEREEIIQLLMQPHPRGDGDGDRSLCVIPIVGIGGLGKTTLAKLVFNDKRVDELFQLKMWVCVSDDFDVRQIIIKIINSALASAPATALAHQENINNLDIEQLQSRLRYKLSGQKFLLILDDIWNEDRAKWIQLKDLIKVGAIGSKILVTTRNNSIASMMGTVPSYVLEGLSLENCLSLFVKWAFKEGEEEKYSNLMEIGKEIVKKCRGVPLAVRTLGSSLFSKFDLDKWKFVRDSELWSIRQNRDDILPALKLSYDQMPSHLRHCFTYFSLYPKDFGFTSVQITKLWTALGLIHSQDGSQKLENIANEYIDELHSRSFLQDFEDFGHFYYFKIHDLVHDLALYVAKEECVVVDSQTQNIPEQVRHLSIVENNSLAHALFPKSSSVRTILFPIEGVGLDSETVLDTWVSRYKYLRVLDLSDSSFEALSNSIAKLEHLRVLNLSNNCKIKGLPPSICKLQNLQVLSLSGCKKLETLPKGLGKLINLRQLYITTNQSVLSLDELASLSNLQTLSFEYCNNLQHLIGGKQLTSLEALIVQSCGSLVFIPLDILPKLEALLVTGCGMLELSEHSENREIMAFTINKLRLKFLHLEYFPRLETLPEWIEGAAETLQTLIIINFPELWMLPESLTRMTHLKMLHISNCPQLYYLPSGMKRLTTLGTLTIDGCPVLGRKCHPKSGEYRHMIAHIKRVSIGEPKEEEEPLSQNESIN. 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02939 881 Gene3D - 10 124 - -
Seca1g02939 881 Pfam NB-ARC domain 193 429 IPR002182 GO:0043531
Seca1g02939 881 CDD RX-CC_like 2 134 IPR038005 -
Seca1g02939 881 FunFam Probable disease resistance protein At1g63360 428 516 - -
Seca1g02939 881 PRINTS Disease resistance protein signature 379 393 - -
Seca1g02939 881 PRINTS Disease resistance protein signature 628 644 - -
Seca1g02939 881 PRINTS Disease resistance protein signature 199 214 - -
Seca1g02939 881 PRINTS Disease resistance protein signature 282 296 - -
Seca1g02939 881 Pfam Leucine rich repeat 585 642 IPR001611 GO:0005515
Seca1g02939 881 Gene3D - 342 426 IPR042197 -
Seca1g02939 881 Gene3D - 152 337 IPR027417 -
Seca1g02939 881 PANTHER DISEASE RESISTANCE PROTEIN RP 51 730 IPR044974 GO:0006952
Seca1g02939 881 Gene3D - 427 516 IPR036388 -
Seca1g02939 881 Gene3D Ribonuclease Inhibitor 520 853 IPR032675 -
Seca1g02939 881 Pfam Rx N-terminal domain 10 98 IPR041118 -
Seca1g02939 881 SUPERFAMILY L domain-like 505 846 - -
Seca1g02939 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 441 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02939 Seca-Chr1 80779637 80782282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02939 200 838 WRKY Transcription Factor Family AT5G45050 21.884 2.47e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02939 - - gmx:100794422 1273.07