Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02935 ATGACTCAGAACCATGTTGGTGAATCTTCTACTGTTATTCAGTTTAGGAATCTATTGCATTTGCAATTGGTTAGCGTCCCATTTCCAAAGTCTCTTTTTGAGTCGAGGAAGGATTTACTAGGTCGTGGCATTCAAGCAATTGACCCAATGGGGAATGATTTCATATTTCCTCTACGTTTTGGTTGTGGTGGTGCTGTCATGATTTGGGGGCCTCTGCCTCGTGATTTTGTTAAGAACTTTTTGAAGGAAGAGTGGGATAGCCTTGTCATTAGGGTAGATGACCGTTGGAATTATTCATGCAAACTTGTTTGGTCTAGTCGTTCCATTTTGAAAGATGAGTGTCACCTTGGCAAAGGATGGTGTACCTTCGTGAAGGAAATGGGGCTTCGCAGTGGAGACAAAGTCCTTTTCCGCACCATTGACAATAATGTCATAAGAGTAAAATGGCTTCTTAGTCACACTCTTACTCTTCACCTAATGGTGGCAATGTCAATGTTGATGGGAGGTTATGCTTGTGTGGGCGTATTTCCTCAGTTAGGACTTCCTGGACTACCAGGAACTATGGCCGTAAATTTTATGTCTGCTCGCTTAGTCTGA 597 0.4271 MTQNHVGESSTVIQFRNLLHLQLVSVPFPKSLFESRKDLLGRGIQAIDPMGNDFIFPLRFGCGGAVMIWGPLPRDFVKNFLKEEWDSLVIRVDDRWNYSCKLVWSSRSILKDECHLGKGWCTFVKEMGLRSGDKVLFRTIDNNVIRVKWLLSHTLTLHLMVAMSMLMGGYACVGVFPQLGLPGLPGTMAVNFMSARLV. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02935 198 ProSiteProfiles B3 DNA-binding domain profile. 72 153 IPR003340 GO:0003677
Seca1g02935 198 Gene3D - 52 151 IPR015300 -
Seca1g02935 198 Pfam B3 DNA binding domain 72 142 IPR003340 GO:0003677
Seca1g02935 198 SUPERFAMILY DNA-binding pseudobarrel domain 71 149 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02935 Seca-Chr1 80750077 80752993 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02935 B3 1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02935 - K20456 jcu:110009416 41.2022