Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02934 ATGGATGTGGAAAACACGGAAAGTTCTATTGCTAAGGGTATAGAAGATCATGAGAGAATTGATCATGTGTCTCATGAGGCTATTAATATTATTGATGAGCAACCTAATCTTTGTCCTGGCATTGGAATGGAATTTGATTCCCTTGAGGATGTTAAGGAGTTATACACATCATTTGCTAAGAAAGCGGGTTTTGGTATTCGTACTCGCTCAACTAAAGAGAATTTTTGTTGGCTCGTATGTTCTAATGAAGGCAAGCATATAGTCAAGAATGGTGGGGAAGGGGAATGTAATGTTTGCATGGGAAAAACAAAGAAAAAGTGTTCAACTTCAAGAACAGATTGTAAGGCGTCCCTTATTGTCTCAAAAGCATGGAAGAGAAGTAAATGGATTAGCAAAAGCTTTGATAATGTTCATAATCATGCCATGATCAGCCCTAAGAGTGTGAGCTATCTTCGATGTCATAAAAAAATGAGCACAACAGCTAAAAACCTTGTTGAGAAGTTTGATGAAGAAGGGGTACCTACAGGAAAGGTTGCCGCAATGTTTAATGGTGGAGATATATCTTTCTCTAACAGGGATTGCTGGAATCATCTTAGAAATGTTAGAAGAAGAAATCTTGATATTGGAGATGCCCAAGCTGTTTTGAACTTTTGTAAGGAAAAGCAAGCTGAAAATCCAAATTTCTTCTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTTTTTTGGGTAGATGCAAGATCAAGAATGGCGTACAAGAATTTTGGAGATGTCATTACATTTGATACAACATATAGGACCAACAAGTACAACATGCCTTTTGCTCCTTTTACTGGGTTGAATCATCATTGTCAATCCATATTATTTGGTTGTGCTTTATTACAAGATGAGACTGAGAAGACTTTCGAATGGCTATTTCACACTTGGCTCGAGGCAATGGGTGGAAAAAGTCCTGTGTCAATAATAACATATCAAGATTTGGCAATGAAAGCTGCTATACCCAAGGTATTTCCAAACACTCGTCATAGATTATGCTTATGGCACATTAGAAAAAAAATTCCTGAGAAGTTTTCTCATATATACCATAAAAAATCAGCTTTCAAGCGTGATTTGAAATCATGCATTCGTGATTCATCATCTATAAAGGATTTTGAAGAAGACTGGGAGCGTATAATGATTGCTTATGATTTGAAGAAGAATGAATGGCTTCAAGGCTTATACAATATAAGAGATTCATGGGTGCCTGTTTATAATAGAGGAACTTTTTTTGGTGGGATGAACACTACACAGAGGAGTGAAAATATTAAATCAAAGATTGAGGAGCATGCTGCATCAATTTATACAAGAGCCATTTTTGGGAAGTTTCATAATGAACTGGCTAAGATTAATCAATTCACAAAGGAGAAGATTGAAAAGAATGGGTCTCAGTATACATACAAGGTATCCAACTATTTTGACTCTCGAGACACAGTTATAGTTTGTGTGGATCTTGACACAAAGGTTGCTAATTGCAGTTGCCAACTATATGAATTTTTGGGGATTTTATGTAGACATATCTTGGTGATTTTTCAAGCAAAAAATATCATTGAAATTCCAAATAATTATATTTTAGAGCGTTGGACAAAAGACGCTAACAGAGGCATTGGATTTAATGAAAATGGAGCAACTTCTTCATGTGATGCTAATAATTCAGCAACTCTGCGAAGTATACATGTGCATAGTCAAGCTAGTTTATTATCTGATCTTGCTACAAAATCTGAAAAGTTATACATGTTCATATCATCTGAAATGGAGCAAACATACAAAAGAGCTATACAAATGGAATCTGAAATGTGCCTTGAAAATGAGAGGTTGGTTTATGGAGCAAAGGCTGAGGCAACAATTGCTATTGGATTTGATGATTTCATAGTAGATGCATTGCGAGGTACTGGATTCTATCAGAAGGCACAGTTGGAGATTAAAAGAGCTGATGGTAATGAGGCCATCATTGCCGAAGAAGTTTTTGAGAAAACAAAGGAAAAATTCCAAATCCGAGATCATAGAGGGTGGTCCGAGGTGCCTGGTATGGTGGTCCGAGGTAGGCTAGAGGTTGTTGTAGGCTCTCCGGTGGACGCTCCGTTGCAGGGGCGCGCGGTGGTGTACCTGCGAAGGCACTCCAACGCTCAAGTTAGTGGAGGAAGAAGATGGGGCATGGCAGGTGGAGCAGGCACGCCTTCGCCGCCCTCTCCTGATGTGGCCGTAACTCCTGGTGGCGTGTGTCAGGACCTCCCAGCTTTATTGGGAGTGACATGGGGCGCATTAAATGCGATGAGACTTGTTCTGTTGGGTAATTCCGTGGCATCTCCCGTTCGGTCTGACCGTAGGATCCCCTCGTTCAGCGTAGCCGATGGCTCGGGTACGGATCAGTTGCCCCTCAGGGCTATAGTGAGCGAGTGGCTCACCATCGGCGATGTCAGGTTGGACATATCGTTCCGCCTTTCTAGGCCTGTCGGCTGA 2502 0.4009 MDVENTESSIAKGIEDHERIDHVSHEAINIIDEQPNLCPGIGMEFDSLEDVKELYTSFAKKAGFGIRTRSTKENFCWLVCSNEGKHIVKNGGEGECNVCMGKTKKKCSTSRTDCKASLIVSKAWKRSKWISKSFDNVHNHAMISPKSVSYLRCHKKMSTTAKNLVEKFDEEGVPTGKVAAMFNGGDISFSNRDCWNHLRNVRRRNLDIGDAQAVLNFCKEKQAENPNFFYAIQCDDEDRMINFFWVDARSRMAYKNFGDVITFDTTYRTNKYNMPFAPFTGLNHHCQSILFGCALLQDETEKTFEWLFHTWLEAMGGKSPVSIITYQDLAMKAAIPKVFPNTRHRLCLWHIRKKIPEKFSHIYHKKSAFKRDLKSCIRDSSSIKDFEEDWERIMIAYDLKKNEWLQGLYNIRDSWVPVYNRGTFFGGMNTTQRSENIKSKIEEHAASIYTRAIFGKFHNELAKINQFTKEKIEKNGSQYTYKVSNYFDSRDTVIVCVDLDTKVANCSCQLYEFLGILCRHILVIFQAKNIIEIPNNYILERWTKDANRGIGFNENGATSSCDANNSATLRSIHVHSQASLLSDLATKSEKLYMFISSEMEQTYKRAIQMESEMCLENERLVYGAKAEATIAIGFDDFIVDALRGTGFYQKAQLEIKRADGNEAIIAEEVFEKTKEKFQIRDHRGWSEVPGMVVRGRLEVVVGSPVDAPLQGRAVVYLRRHSNAQVSGGRRWGMAGGAGTPSPPSPDVAVTPGGVCQDLPALLGVTWGALNAMRLVLLGNSVASPVRSDRRIPSFSVADGSGTDQLPLRAIVSEWLTIGDVRLDISFRLSRPVG. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02934 833 Pfam FAR1 DNA-binding domain 54 142 IPR004330 -
Seca1g02934 833 ProSiteProfiles Zinc finger SWIM-type profile. 491 529 IPR007527 GO:0008270
Seca1g02934 833 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 605 IPR031052 GO:0006355
Seca1g02934 833 SMART 26again6 504 531 IPR006564 GO:0008270
Seca1g02934 833 Pfam MULE transposase domain 260 354 IPR018289 -
Seca1g02934 833 Pfam SWIM zinc finger 497 529 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02934 Seca-Chr1 80741647 80745834 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02934 MULE 4.9e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02934 - - mtr:112420114 723.776