Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02930 ATGGAAATTCTGTGCTTGTTGCATCTTCTGCTAGCTTGGTATGTGTCAAATTGTGAGCTTGTGGGTGCTGAGTTCCAGGACCAAGCTATATTACTTGTCATCAACCAAGAGCTTAGAGTTCCTGGATGGGGTGATGCCAACAACACAAATTACTGCACTTGGCAAGGAGTAAGCTGTGGTAATCATTCAATGGTGGAGAAGCTTGATCTCGCTCACAAGAATCTTCGAGGTAATGTATCTTTAATGTCTGAGCTCAAAGCTTTGAAGCGGCTTGACCTTTCAAATAATAACTTTGATGGATTGATTCCTCCTGCTTTTGGAAATTTATCTGATCTTGAGGTTCTAGATTTGTCTTCAAATAAGTTTGAAGGTTCAATTCCACCACAGTTTGGTGGTCTCAAAAACCTTAAATCATTAAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTTCATGGCCTAGAGAAATTGCAGGATTTGCAAATTTCTAGTAATCATTTGAGTGGTTTTATACCTTCTTGGGTGGGTAATTTGACCAATTTGAGAGTTTTTACTGCTTATGAGAATCGTTTAGGTGGCAGGATTCCAGATAATCTAGGCTTGATTCCTGATCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCCAGCATTTTTGCTTCAGGGAAGCTAGAAGTTCTGGTTCTTACCCAGAATAATTTTAGTGGTGACCTTCCTAAGGAAATTGGGAATTGTCTAGCCCTTTCCAGCATTCGAATTGGAAACAACCATCTAGTAGGTAGTATTCCTAAGACTATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTCTGGTGAGATTGTGTCAGAATTTGCTCAGTGTGCTAATCTCACCCTCTTGAATTTAGCTTCAAATGGATTTTCTGGAATGGTTCCACAAGAATTTGGACAACTTATGAACCTTCAGGAATTGATTCTTTCCGGAAATAGCCTATTTGGTGATATTCCAAAATCAATTCTGAGTTGCAAAAATCTCAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATTTCTCGGTTGCAGTACTTGCTATTGGATCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAGCTTCTTGAATTACAATTGGGAAGTAATTATTTGACTGGAACTATTCCTCCTGAGATTGGTCGCATTAGGAACTTACAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACCACTGCCTCCTGAATTAGGAAAACTGGACAAACTTGTTTCTCTGGATGTTTCAAATAATCGGCTCTCAGGTAATATCCCTGCTGATCTCAAAGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCAGTTTGGAGGTCCTGTACCAACTTTTGTACCATTCCAGAAAAGTCCTAGTTCAAGTTTTCTGGGCAATAAAGGACTTTGTGGAGAGCCATTGAACTCTACATGTGGAGATCTTTATGATGATCACAAGAGTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCAGTTTTTATGTCAGTAACTGTAGTTGTCTTGCTGTTTATGCTCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGATGCAATCAATGACAAACCAACTATAATAGCAGGAAGTATTTTTGTTGATAATCTAAAACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAGGACTCAAATAAGCTTAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATTATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCCATAGACAAGGCAATAATCCACCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGGGAAAAGTCTGTCATGATAATCTAGTGCGGCCGATTGGTTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCAAATGGAACATTGGCTCAACTTCTTCATGAATCTACCAGGCAACCTGAATATCAGCCTGACTGGCCTGCTAGGCTATCCATTGCCATTGGAGTGGCAGAAGGTTTAGCTTTCCTTCATCATGTGGCAATTATCCATCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAACTTCAAGCCATTGGTTGGGGAGATTGAGATTTCAAAACTTTTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCCCCAGAATACGCGTACACAATGCAAGTCACAGCACCAGGAAATGTTTACAGCTATGGTGTTGTCCTGTTGGAAATCCTCACAACACGACAACCGGTTGACGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCAGTGAGAGGTGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTGAAGGTTGCACTGCTTTGCACTGACAATACACCAGCCAAACGACCAAAAATGAAGAATGTAGTAGAAATGCTTCGAGAGATAAAGCAAAACTGA 2664 0.4005 MEILCLLHLLLAWYVSNCELVGAEFQDQAILLVINQELRVPGWGDANNTNYCTWQGVSCGNHSMVEKLDLAHKNLRGNVSLMSELKALKRLDLSNNNFDGLIPPAFGNLSDLEVLDLSSNKFEGSIPPQFGGLKNLKSLNLSNNVLVGEIPMELHGLEKLQDLQISSNHLSGFIPSWVGNLTNLRVFTAYENRLGGRIPDNLGLIPDLQILNLHSNQLEGPIPASIFASGKLEVLVLTQNNFSGDLPKEIGNCLALSSIRIGNNHLVGSIPKTIGNLSSLTYFEADNNNLSGEIVSEFAQCANLTLLNLASNGFSGMVPQEFGQLMNLQELILSGNSLFGDIPKSILSCKNLNKLDISNNRFNGTIPNEICNISRLQYLLLDQNSIRGEIPHEIGNCAKLLELQLGSNYLTGTIPPEIGRIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPADLKGMLSLIEVNFSNNQFGGPVPTFVPFQKSPSSSFLGNKGLCGEPLNSTCGDLYDDHKSYHHRVSYRIILAVIGSGLAVFMSVTVVVLLFMLRERQEKVAKDAGIVDDAINDKPTIIAGSIFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSIDKAIIHHQNKMIRELERLGKVCHDNLVRPIGYVIYEDVALLLHNYFPNGTLAQLLHESTRQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02930 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02930 887 CDD STKc_IRAK 612 884 - -
Seca1g02930 887 Gene3D Phosphorylase Kinase; domain 1 576 684 - -
Seca1g02930 887 Gene3D Ribonuclease Inhibitor 182 256 IPR032675 -
Seca1g02930 887 Gene3D Ribonuclease Inhibitor 257 524 IPR032675 -
Seca1g02930 887 Gene3D Ribonuclease Inhibitor 25 177 IPR032675 -
Seca1g02930 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Seca1g02930 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Seca1g02930 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 576 684 - -
Seca1g02930 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Seca1g02930 887 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Seca1g02930 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 519 - -
Seca1g02930 887 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 174 - -
Seca1g02930 887 SUPERFAMILY L domain-like 48 294 - -
Seca1g02930 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Seca1g02930 887 SUPERFAMILY L domain-like 256 512 - -
Seca1g02930 887 SMART LRR_typ_2 133 156 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 157 181 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 205 229 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 446 469 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 109 132 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 373 397 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 325 349 IPR003591 -
Seca1g02930 887 SMART LRR_typ_2 85 108 IPR003591 -
Seca1g02930 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 685 887 - -
Seca1g02930 887 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 256 882 - -
Seca1g02930 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Seca1g02930 887 PRINTS Leucine-rich repeat signature 88 101 - -
Seca1g02930 887 PRINTS Leucine-rich repeat signature 109 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02930 Seca-Chr1 80686390 80690903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02930 1 886 Receptor kinase-like Gene Family AT2G41820 72.441 0.0 1308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g02930 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02930 - - gmx:100789684 1615.13