Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02924 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTCGTTGATTGCAAGCTCCTTGATTTCTTACCTTTCACATGCGATCGTTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAGCATAAGTGCACAAAAGCCAACAAACTAGATGTCACAGTTGTTATATGTCCACTTTGTGCTAAAGCAGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGCATCATGTTAACATTGACTGTGACCCATCAAATTATGATAAAGTAACAAAGAAGAGAAAATGCCCGGCCCCTGGATGTAGAGAGATCTTGGTATTCTCAAACACAATTAAATGCAGGGATTGCATGACAGACCATTGTTTGAAGCACCGATTTGGACCTGACCACAAATGTTCTGGGCCAAAAACCGAAGCAGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGCATGGCAAACAGCATGGGATGGGGTAGGACAAAGCAGTGGCAGTGGAAATTATCAAGTGGAGCAATGCCCTCGGTGTGGTGCAAAGTTTTCCTCAGTCACTACTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACATATCTAGAGCAAAGAAGGTGGCGATTGATGCATGTCCTAGGTGTAGTAAAGGATTTGTAGACCCGATTTCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGTAGTTATAAAGCATAG 732 0.4262 MGTPEFPDLGKHCSVVDCKLLDFLPFTCDRCNQVYCLEHRSYIKHKCTKANKLDVTVVICPLCAKAVRLIPDQDPNITWEHHVNIDCDPSNYDKVTKKRKCPAPGCREILVFSNTIKCRDCMTDHCLKHRFGPDHKCSGPKTEAGMSKLSGEINQAWQTAWDGVGQSSGSGNYQVEQCPRCGAKFSSVTTLVDHVQKVHERSGNISRAKKVAIDACPRCSKGFVDPISLVEHVERDHGGSYKA. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02924 243 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 202 - -
Seca1g02924 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 204 IPR013087 -
Seca1g02924 243 SMART c2h2final6 214 237 IPR013087 -
Seca1g02924 243 SMART c2h2final6 176 199 IPR013087 -
Seca1g02924 243 Pfam C2H2-type zinc finger 177 199 - -
Seca1g02924 243 SUPERFAMILY AN1-like Zinc finger 54 143 IPR035896 -
Seca1g02924 243 ProSitePatterns Zinc finger C2H2 type domain signature. 216 237 IPR013087 -
Seca1g02924 243 Gene3D - 2 58 IPR035896 -
Seca1g02924 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 242 IPR013087 -
Seca1g02924 243 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Seca1g02924 243 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Seca1g02924 243 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Seca1g02924 243 Gene3D Classic Zinc Finger 153 240 - -
Seca1g02924 243 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Seca1g02924 243 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Seca1g02924 243 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Seca1g02924 243 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Seca1g02924 243 ProSitePatterns Zinc finger C2H2 type domain signature. 178 199 IPR013087 -
Seca1g02924 243 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Seca1g02924 243 Gene3D - 82 152 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02924 Seca-Chr1 80617163 80618533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02924 1 243 C2H2 Transcription Factor Family AT2G41835 56.098 1.10e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g02924 zf-AN1 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02924 - - gmx:100806459 414.461