Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02914 ATGGGTAACTGCTGCGCGACCCCCTCTGTTTCCGGCGAGGAACAGACCAAGAAGAAGAACAAGAAGGACGGTCACAACAACGGTGGAGGGTCAAAACTCACCGTTTTGAAGGACCCAACAGGTAGGGAGATCGAGGTTCGGTATGAGCTAGGTCGGGAGCTAGGAAGGGGAGAGTTCGGAATAACGTACCTGTGCACGGATAAGGAAACAAGGGAAGAGTATGCGTGCAAGTCAATATCGAAGAAGAAGCTGAGAACAGCTATAGACATTGAAGATGTGAGGAGGGAAGTGGAGATCATGAGGCACTTACCAAAACACTCTAACATCGTGTGGTTGAAGGATACTTATGAAGATGACAATGCTGTGCATCTTGTTATGGAGCTTTGTGAAGGTGGAGAGCTCTTTGATCGCATCGTAGCGCGTGGCCACTACACTGAACGCGCCGCCGCAGCTGTCACTAAAACCATCGTTGAAGTAGTTCAGATGTGCCACAAGCATGGTGTGATGCATCGGGATCTCAAGCCTGAAAACTTTTTGTTTGCCAATAAGAAGGAAACAGCAGCTCTGAAAGCCATAGATTTTGGATTGTCAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAAATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGAGGAATTATGGCCCAGAAGTAGATATTTGGAGTGCAGGAGTAATTCTTTACATCTTGCTTTGTGGTGTCCCACCGTTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGATCCGAGGCGGCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAAAATGCGAAAAAAGCTCCTAATGTTTCTTTAGGAGAAACAGTAAAAGCAAGACTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCAGAGCATTTGACAGTAGAAGAAGCTGCTGGACTAAAAGAGGGGTTCCAGCGTATGGATACAAACAACAAAGGCAAGATTAACATTGATGAACTACGAGTAGGGTTGCACAAACTAGGCCATCAAATTCCTGAAGCAGATCTCCAAATTCTTATGGAAGCAGGTGATGTAGACAGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTACTGTTCATCTGAGAAAGATGGGCAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATAGGAACCAAAGTGGGTATATTGAGATTGACGAGCTACGTGATGCCTTATCTGATGAGATTGACCCTAACAGTGAGGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGGATAAGTTATGAGGAATTTGCTACAATGATGAAGGCTGGAACAGATTGGAGAAAAGCATCAAGACAGTATTCACGAGAGAGGTTCACTAGTCTCAGCCTGAAATTGATGAGGGACGGGTCATTGCAAGTAAACAATTTCCATATTTTACTTTTGGAAAGGAAAATATGA 1596 0.4355 MGNCCATPSVSGEEQTKKKNKKDGHNNGGGSKLTVLKDPTGREIEVRYELGRELGRGEFGITYLCTDKETREEYACKSISKKKLRTAIDIEDVRREVEIMRHLPKHSNIVWLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQRMDTNNKGKINIDELRVGLHKLGHQIPEADLQILMEAGDVDRDGHLDYGEFVAITVHLRKMGNDEHLHKAFQFFDRNQSGYIEIDELRDALSDEIDPNSEEVINAIMHDVDTDKDGRISYEEFATMMKAGTDWRKASRQYSRERFTSLSLKLMRDGSLQVNNFHILLLERKI. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02914 531 Pfam EF-hand domain pair 424 487 IPR002048 GO:0005509
Seca1g02914 531 Pfam EF-hand domain pair 354 414 IPR002048 GO:0005509
Seca1g02914 531 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Seca1g02914 531 Gene3D Phosphorylase Kinase; domain 1 50 133 - -
Seca1g02914 531 FunFam calcium-dependent protein kinase 13 134 314 - -
Seca1g02914 531 SUPERFAMILY EF-hand 335 512 IPR011992 -
Seca1g02914 531 ProSiteProfiles Protein kinase domain profile. 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02914 531 CDD EFh 425 487 IPR002048 GO:0005509
Seca1g02914 531 MobiDBLite consensus disorder prediction 1 36 - -
Seca1g02914 531 Gene3D Transferase(Phosphotransferase) domain 1 134 314 - -
Seca1g02914 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 482 - -
Seca1g02914 531 FunFam Calcium-dependent protein kinase 7 315 490 - -
Seca1g02914 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Seca1g02914 531 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Seca1g02914 531 CDD STKc_CAMK 47 305 - -
Seca1g02914 531 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Seca1g02914 531 Gene3D - 315 489 - -
Seca1g02914 531 FunFam Calcium-dependent protein kinase 1 50 133 - -
Seca1g02914 531 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Seca1g02914 531 SUPERFAMILY Protein kinase-like (PK-like) 47 314 IPR011009 -
Seca1g02914 531 Pfam Protein kinase domain 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02914 531 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Seca1g02914 531 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
Seca1g02914 531 SMART efh_1 389 417 IPR002048 GO:0005509
Seca1g02914 531 SMART efh_1 425 453 IPR002048 GO:0005509
Seca1g02914 531 SMART efh_1 461 489 IPR002048 GO:0005509
Seca1g02914 531 SMART efh_1 353 381 IPR002048 GO:0005509
Seca1g02914 531 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Seca1g02914 531 SMART serkin_6 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02914 531 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02914 Seca-Chr1 80420308 80424737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02914 1 519 EF-hand Containing Proteins AT5G19450 79.395 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g02914 Pkinase 4.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02914 K13412 - gmx:100790745 929.472