LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g02900	ATGACATCTGATGCATGGAGTTTACTAGTGAAGAGGATGGTCGTCTCTTTTACCAATCATATGCAAAGTGCCATGGTTTTGTTGTTAGGAAAGATGAGGTATGTCGAGATTTTAAAGGGAATGTTATCATGCGTTAGTTTGTGTGCAACAAATAGGGTAGTAAGAACTGAAAAACATTTCATGAAAGTGGATAGGAAAAAAGAGCATAGGCCAATAACTTGTGTGAGGTGTGAAGCTAAGCTAAGAATTCGCTTAAATTATAAGACATCAAAATGGAATGTGGTATCTTTTGTGGAGACTCATAATCATGAGCTTCCCCCTTACAATTATGTGCATTTATTACCTGCTTATAGAGGCCTAACTGATGCGGATAAAGCTCAAGTAGATAGGTTGCATGCATATGGTGTTAGAACATGCCACATAATGGGATACATGTTAGATCAAATGGGGGGATATGCTTCGCTTGAGTTTTGTAGAAAGGATTTGTATAATTATATTGAACGACAGAAACTTGAAAAGATTAAAGATGGGGATGCACATGCAACCTTATGTTATATACAAGCAAAGGCAAACAATGATCCCACACTTCGTTGTAGTTTCCTTGCGACAGATGATGGTTGTTTGAGAAATTTATTTTGGGCAGATGGGGGCAGTATGGGTGATTATTACTGCTTTGGGGATGTTCTTGCATTTGACACAACTTATAGGAAAAACCGATATAACAAACCTTTGGTTATATTTTCTGGTTGTAATCATTATGGCCAGACAGTTATTTTTTGTTGTGTGTTGGTTGCCGATGAGACTATTGAAACTTATAAGTGGTTGTTAGAAGAATTTCTCCGTGCTATGTCATATAAACATCCTGCTGCAATAGTTACAGATGGAGGTAGTAGTATGAGAGAGGCTATCAAGCAGGTGTTCTCGAATGTTTCACATCGCCTTTGTGCATGGCATTTGCACAAAAATACATGTGAAAATGTTAAGAATTCGGGATTTTTGGATGATTTTAAGGTAGCCATGTATTCTAATTTCACTGAGGAAAAATTTGAAGTGTATTGGAAGCGAATGGTTGCAAAACATGGTCTTGTAGGAAACAAGTGGGTGACTAAAACCTATGAAAATAGGTCAATGTGGGCTAGTGCATATTTTCGTGATAAATTCTTTGGTTGTATTAGAACAACATCACAATGTGAGGCAATTAATTCCTTGGTGAAGGCGTATGTTAATAAGAAAGATACTATTCTTGAATTCATTAATAGGTTTGAGCAAGTTTTGAGAGAATATACGAAGAATGAGATGATTGCAAAATTCAAGTCTATGTTTACTCAACCCATTTTAACAACCTCTCTTCAGAAAATTGAGATTGAGGCAGCAAAAATATTCACGTTGGAGATTTTTAGGGAAGTGAAATATGAGATTGAGGTTGCTTGTGCTTTAAATGTAATTGCAAGAGAGGAAAATGGAGAGAAGCTTATTTTTAAGATGAACCCATACGGTAAACCTGGCCATGATGTTCAGGTGGTGTATGATGTTGTCAATTCTCAATTTCTATGTGATTGTAGACTGTTTGAGAGTCGTGGAATCCCTTGTTCTTATGTAATATTTGCAATGAAAAATGAAAACATGCAATCCATTCCAAGAAGCTTGATTTTGAATCGTTGGACAAAGAAGTGCAAGAGTGATCTTATTTCCTCATATCAATCAGAGGATGTGGACACTGACGTCATGAAAACTGCCCGTTTAGGGGCTACTGGAGGAGTTTTCCAAAGGTTGGGTTGTATTGTTGTAGAAAAGAGAGAATACTTCAATAATATAATGGAAGATTTGTTGAAGGTGGCAAATAAATATGAGATGATTGGGGAAACACGTGCCACACAAACCAATCGTGAAAAGATTGTGAAAGATCCACCGGTTGTAAAAACAAAAGGAGCACCACAAAAAAAAGTATGGGAGAAAAAGGAGAAGATGCTCAAAGTGCAATAG	1983	0.3676	MTSDAWSLLVKRMVVSFTNHMQSAMVLLLGKMRYVEILKGMLSCVSLCATNRVVRTEKHFMKVDRKKEHRPITCVRCEAKLRIRLNYKTSKWNVVSFVETHNHELPPYNYVHLLPAYRGLTDADKAQVDRLHAYGVRTCHIMGYMLDQMGGYASLEFCRKDLYNYIERQKLEKIKDGDAHATLCYIQAKANNDPTLRCSFLATDDGCLRNLFWADGGSMGDYYCFGDVLAFDTTYRKNRYNKPLVIFSGCNHYGQTVIFCCVLVADETIETYKWLLEEFLRAMSYKHPAAIVTDGGSSMREAIKQVFSNVSHRLCAWHLHKNTCENVKNSGFLDDFKVAMYSNFTEEKFEVYWKRMVAKHGLVGNKWVTKTYENRSMWASAYFRDKFFGCIRTTSQCEAINSLVKAYVNKKDTILEFINRFEQVLREYTKNEMIAKFKSMFTQPILTTSLQKIEIEAAKIFTLEIFREVKYEIEVACALNVIAREENGEKLIFKMNPYGKPGHDVQVVYDVVNSQFLCDCRLFESRGIPCSYVIFAMKNENMQSIPRSLILNRWTKKCKSDLISSYQSEDVDTDVMKTARLGATGGVFQRLGCIVVEKREYFNNIMEDLLKVANKYEMIGETRATQTNREKIVKDPPVVKTKGAPQKKVWEKKEKMLKVQ.	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g02900	660	Pfam	MULE transposase domain	228	322	IPR018289	-
	Seca1g02900	660	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	61	583	IPR031052	GO:0006355
	Seca1g02900	660	Pfam	FAR1 DNA-binding domain	60	105	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g02900	Seca-Chr1	80226755	80228737	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca1g02900		MULE	4.6e-27	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g02900	-		-	ccaj:109792835	727.243