Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02898 ATGTGCTGTGAGTTGGAGCGGTTAAAGCAGCCTGCACCGTCTCCATCACTTTCTCCTATTTCAATACGCACATCTCAACCCAGAAACCACATGATGAATCACTTTTCTGTTGACACTGATGATTCTTTTGCAAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGCTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTAGATGAGGTTGGGCTATGGTATGGTCGTCGTAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAATTGATTCTTTCTCTATCTGATGCTGACATCAACCGGCCTTGTGGCCTTGACAAGAGCACTGCCCTTCACTGTGCGGCGTCCGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTGCTTCTGGCAGCAGGGGCTGATCCAACTTCTGTGGATGCCAATGGGAATCGTCCTGCTGATGTTATTGTTTCTCCTCCCAAGCTTGAATATGTCCGAAACAGTCTTGAAGACCTTCTTCAAACTGATGATTCTATTGGTAGGTGTAATCTTAGAGTGATCACAACTTTGTCAAATGCATATTCTCCGCCTTTATCAACTTCACCTGAGAACGGGTCTCCTTCTGCACAAGATCTCCAGTTGAAGTTAAAGTCAAATGATGTTCCTGTTTCTTCTGCATCTGAGAAAAAAGAATATCCTGTTGATCCATCCCTTCCGGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCGAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTACATCCAGCACAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGCGCAAGGAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTGAGACCGTTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCAATGTCTGTCATCTCTCCTTCACCATTCACTCCGCCCATGTCACCTTCTGCCAATGGCATTTCACACAATTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTACATCTTCCAGGAAGTAATCTTCAGTCTAGTCGATTGAGAGCTTCACTCAATGCTAGAGATATTCCTGCAGATGATTTTGACTTGTTATCTGAATATGATCAACAGCAACAGCTCCTTAATGAGTTGTCTTGCCTCTCTCCACAGCCTATGAATTCTAATACTTTGAACCGCTCTGGTCGTATGAAACCACTGACTCCATCAAATCTTGATGATCTCTTTTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACAGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAATTTCAGCAGCAGCAAAACTTGTTGTCACCTGTGAATACAAATTTTTCTTCTAAAAATGTTGAGCATCCTTTATTGCAGGCCTCTTTTGGGGTTCAGGGATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACGTGAAAAGCAGCAACAATTTCGAAGCCTAAGCTTCCGGGAAGTTGGTTCCAACTCTGCTGCTGCAGCTGCAGCTGCTGCTTCAGCCAATTCTTGGTCAAAATGGGATTCCCCTACTGCGAATGGTAAGGTGGATTGGGCTGTCAGTGCAGATGAATTAGGTAAGCTCCGCAGATCATCTTCATTTGAGCTTGGGAACACTGGTGAGGAACCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTACTGTCTCAAGTGTTACAGCAGCTGGATCCTCTAGCGAGGGATTAAATGTGAGCACACCAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2202 0.45 MCCELERLKQPAPSPSLSPISIRTSQPRNHMMNHFSVDTDDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSDADINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPTSVDANGNRPADVIVSPPKLEYVRNSLEDLLQTDDSIGRCNLRVITTLSNAYSPPLSTSPENGSPSAQDLQLKLKSNDVPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVISPSPFTPPMSPSANGISHNSVAWPQPNIPALHLPGSNLQSSRLRASLNARDIPADDFDLLSEYDQQQQLLNELSCLSPQPMNSNTLNRSGRMKPLTPSNLDDLFSAESSSPRYADPTLTSTVFSPTHKSAVFNQFQQQQNLLSPVNTNFSSKNVEHPLLQASFGVQGSGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSFREVGSNSAAAAAAAASANSWSKWDSPTANGKVDWAVSADELGKLRRSSSFELGNTGEEPDLSWVQSLVKESPTEIKEKLATTVSSVTAAGSSSEGLNVSTPMESVDHAVLGTWLEQMQLDHLVAQQN. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02898 733 ProSiteProfiles Ankyrin repeat profile. 123 158 IPR002110 GO:0005515
Seca1g02898 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Seca1g02898 733 SUPERFAMILY Ankyrin repeat 44 174 IPR036770 -
Seca1g02898 733 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Seca1g02898 733 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Seca1g02898 733 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Seca1g02898 733 ProSiteProfiles Ankyrin repeat region circular profile. 123 157 - -
Seca1g02898 733 Gene3D - 302 364 - -
Seca1g02898 733 PANTHER UNKEMPT FAMILY MEMBER 48 677 IPR045234 -
Seca1g02898 733 SMART ANK_2a 88 118 IPR002110 GO:0005515
Seca1g02898 733 SMART ANK_2a 123 155 IPR002110 GO:0005515
Seca1g02898 733 SMART ANK_2a 41 71 IPR002110 GO:0005515
Seca1g02898 733 FunFam Zinc finger CCCH domain-containing protein 66 259 327 - -
Seca1g02898 733 Gene3D - 22 250 IPR036770 -
Seca1g02898 733 Pfam Ankyrin repeats (3 copies) 49 156 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02898 Seca-Chr1 80123878 80127149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02898 36 726 C2H2 Transcription Factor Family AT5G12850 52.900 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g02898 Ank_2 1.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02898 - - ccaj:109796653 1234.94