Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02887 ATGGCCCAATCATTTGTCTTCGATGTCGCTCATTCACTGTTGGGGAAGCTTTCTTCTTATGCTTATGAAGAAGCTTCTCGAGCTTATGGTGTGTATGATGATCTGCAAGGGATCAAAGACACTCTGTCAATTGTCAAAGGTGTGCTATTGGATGCTGAGTTGAAGAAGGACCAAAGACATGCCTTGCGTGAATGGCTGAGGCAGATTCAACATGTTTGCTCCTACGCTGAAGATGTATTGGATGGATTTCAGTGTCAAAACTCGCGAAACCATCTTGTCAAAGCTTCTGGAAGCACCAGCATGAAGGTAGGTCACTTCTTTTCTTCGTCTAATCCTGTTGTTTTCCGTCTTAGGATGGCTCATCAAATCAGAGATGTTAGGGATAGGTTGGATAAGGTAGCAGCTGATGGGACTAGGTTTGGTCTTGAGAGAATTGACATTGATCCCGGACTTGGTGTGCAAAGGAGAGAAATGAGTCATTCTCATGTTGATGCTTCAGATGTGATAGGAAGGGAGAATGATAAGGAAAAAATTGTCATGTTTTTGATGCAACCCCAACCTGATAGTGATCAAAGTCCCCGTGTTATTCCCATAGTTGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGCTGGTATTCAATGATAAGAGGATGAATGAACTTTTCCAATTGAAGATGTGGGTGTGTGTCTCATATGATTTTGACATTAGGCAGATAATTATTAAAATCATCAACTCTGCTTCAGCTTCAAAAAACATTAGCCACTTAGATATTGAGCAACTACAACTTCGCCTTCGCTATAAACTTTCTGGTCAAAAGTTTTTACTTGTTTTAGATGATATATGGAATGCTGATCGAGCGAAATGGATTGAGTTGAAAGATTTGATTAAAGTTGGTGCAAAAGGAAGCAAAATCTTAGTCACAACACGTAGTAACTCAATTGCTTCAATGATGGGCACGGTAGATCCATATGTTTTAAGAGGTCTTTCTCTAAAGAGTTGTTTATCTTTGTTTGTCAAATGGGCATTTAAGGAAGGCGAAGAAAAAAAATATCCAAATCTAGTTGAGATGGGAAAAGAAATTGTGAAAAAATGTCACGGGGTTCCACTAGCAGTGAGAACATTAGGAAGCTCCTTGTACTCAAAGTTTGATTTAGATAGGTGGGAATTTGTGAGAGACCATGAGATATGGAATCTGAACCAGAAGGAAAATGACATTTTACCTGCACTAAAGCTGAGCTATGATCAAATGCCATCCTATTTGAGGCACTGTTTTGCTTATTTTTCACTTTTCCCCAAAGATTATCGCTTCTCTAATATTATCCCTACTAATCTTTGGCTGGCATCTGGATCACTTCAATCCCCAGATGGGAGTCAAACGCTAGATAATGTTGCAAGAGAATGTATTGAAGAATTACGTTCAAGATCATTTCTTCAGGATTTTGAAGACTATGGTCCGTTATACTTCTTCAAAGTACATGATTTGGTGCATGATCTTGCATTGTATGTTGCGAAAGAGGAATTTCTAGTGGTAGACTCCAATACTAGGAATATACCTGAGCAAGTAAGGCATTTATCACTTATTGAAACTGATTCACTCGGCCATGCTTTGTTCCCCAAGTCCAAAAGTGTGAGGACTATACTACTTCCCATCAATGGAGTTGGTCTTGACAGTGAAACTCTTTTGGATACATGGATGTCAAGATACAAATACTTACGGTATTTAGATTTAAGTGATTCTTCATTTGAGACACTACCAAATTCAATTGCTAAATTGGAGCATTTGCGAGTTCTCTATCTTTCTAATAACCGCAAAATCAAAAGACTTTCTCGTTCTATATGCAAACTTCAAAACTTGCAGCTTTTGTCACTTAAGGGATGCATTGAGCTTGAAACATTGCCCAAAGGATTTGGGAATCTGATTAGCCTTCGACACCTGAGTATAACCACAAAACAATTCCTTCTGTCAGAAAATGAATTTGCAAGCTTGAGTAATCTTCAAACTTTGGGGTTCTTTTATTGTGACAATCTGAAGTTTTTGTTCAGCAAGGCACAACTTACTTCTCTTGAAGAATTGGTTGTTCTATCATGTGGGAGCCTAGAGTCCTTACCTTTTTATATTCTCCCGAAATTACAGACTCTGTCAGTCATTGACTGTAAGGTATTAAACCTCTCATTGAACCAGGAAAGCTCAATCCAAATATCAAGGATGAAGTATCTACATCTGGAGGGTTTTCCAAGGCTTCTAACATTGCCTCAATGGATTGAAGGAGCAGCAAACACTTTACATACCTTGATGATTTTTAACTTTCCTAATCTCAAGATGCTTCCTGAGTGTCTGGCAGCAATGACTCATCTTAAGAGGCTCCATATTTTTGACTGTCCTCAACTGTCAAGTTTTCCAAGTGACATGCACTGCCGCACTACCCTTGAACATTTGATGATAGGTGGTTGTCCTGAATTGTGCAGAAAATGTCAGCCACAATCTAATGAATATTGGCACATGATTTCTCGCATCAAACACATTTTCATTGGAGAACCAAGAGGAGAGGAGGAACAAAGTCATCGACCTCAAAGGTAA 2583 0.3914 MAQSFVFDVAHSLLGKLSSYAYEEASRAYGVYDDLQGIKDTLSIVKGVLLDAELKKDQRHALREWLRQIQHVCSYAEDVLDGFQCQNSRNHLVKASGSTSMKVGHFFSSSNPVVFRLRMAHQIRDVRDRLDKVAADGTRFGLERIDIDPGLGVQRREMSHSHVDASDVIGRENDKEKIVMFLMQPQPDSDQSPRVIPIVGIGGLGKTTLAKLVFNDKRMNELFQLKMWVCVSYDFDIRQIIIKIINSASASKNISHLDIEQLQLRLRYKLSGQKFLLVLDDIWNADRAKWIELKDLIKVGAKGSKILVTTRSNSIASMMGTVDPYVLRGLSLKSCLSLFVKWAFKEGEEKKYPNLVEMGKEIVKKCHGVPLAVRTLGSSLYSKFDLDRWEFVRDHEIWNLNQKENDILPALKLSYDQMPSYLRHCFAYFSLFPKDYRFSNIIPTNLWLASGSLQSPDGSQTLDNVARECIEELRSRSFLQDFEDYGPLYFFKVHDLVHDLALYVAKEEFLVVDSNTRNIPEQVRHLSLIETDSLGHALFPKSKSVRTILLPINGVGLDSETLLDTWMSRYKYLRYLDLSDSSFETLPNSIAKLEHLRVLYLSNNRKIKRLSRSICKLQNLQLLSLKGCIELETLPKGFGNLISLRHLSITTKQFLLSENEFASLSNLQTLGFFYCDNLKFLFSKAQLTSLEELVVLSCGSLESLPFYILPKLQTLSVIDCKVLNLSLNQESSIQISRMKYLHLEGFPRLLTLPQWIEGAANTLHTLMIFNFPNLKMLPECLAAMTHLKRLHIFDCPQLSSFPSDMHCRTTLEHLMIGGCPELCRKCQPQSNEYWHMISRIKHIFIGEPRGEEEQSHRPQR. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02887 860 Gene3D - 10 124 - -
Seca1g02887 860 SUPERFAMILY L domain-like 492 846 - -
Seca1g02887 860 Gene3D - 414 503 IPR036388 -
Seca1g02887 860 PANTHER DISEASE RESISTANCE PROTEIN RP 51 803 IPR044974 GO:0006952
Seca1g02887 860 PRINTS Disease resistance protein signature 269 283 - -
Seca1g02887 860 PRINTS Disease resistance protein signature 366 380 - -
Seca1g02887 860 PRINTS Disease resistance protein signature 195 210 - -
Seca1g02887 860 PRINTS Disease resistance protein signature 591 607 - -
Seca1g02887 860 FunFam Probable disease resistance protein At1g61300 153 324 - -
Seca1g02887 860 Pfam NB-ARC domain 171 416 IPR002182 GO:0043531
Seca1g02887 860 Pfam Rx N-terminal domain 11 98 IPR041118 -
Seca1g02887 860 Gene3D Ribonuclease Inhibitor 535 844 IPR032675 -
Seca1g02887 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 428 IPR027417 -
Seca1g02887 860 Gene3D - 153 323 IPR027417 -
Seca1g02887 860 Gene3D - 330 413 IPR042197 -
Seca1g02887 860 Pfam Leucine rich repeat 572 628 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02887 Seca-Chr1 79996577 79999276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02887 194 432 WRKY Transcription Factor Family AT5G45050 26.562 3.57e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02887 - - gmx:100794422 1193.72