Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02886 ATGCAAGTATCACCAAGCACTGATACCACCTTCCCTTGTTCAACTATCATCACAATATCAACCATGGATACTTGCAAGAAGTCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGAAAAGGTGGCCCCCAGAATGCTTCGTGCGAGTATCGAGGCGTTCGGCAAAGAACATGGGGCAAATGGGTTGCTGAGATTAGAGAGCCTAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCTCACCTGAAATCCAACTCCAATTCACCTATCAAATCTGGAAAGTTCAAATGGTTGCCTTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGCATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTTCAAGAGCTTAAGCAGAATGCAGTTGTGAGTAAATCCCTTTCTAGTTCATCCAATGATCCAAAGGCAGAAGAAATTCAGAATCATGCAGAAAATCCTCCAAAGGAAAAAGATACTCAGACATCACCACAGGAGATGCTTGGAGATCATCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAAGACAGTCAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCCTGAAGCTGTGTCAAGAGATGATAATGATCAACTGGGATTGTTTTATGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGATGGTATTCAGGAATCAGGAGCCACCCAGCTTGAAGCATATGACCTGAATGATGAGCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 900 0.4311 MQVSPSTDTTFPCSTIITISTMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKSNSNSPIKSGKFKWLPSKNFISMFPSCALLNVNAQPSVHLIHQRLQELKQNAVVSKSLSSSSNDPKAEEIQNHAENPPKEKDTQTSPQEMLGDHQEKPQIDLHEFLQQLGILKEERQSERTDSSGSSTVPEAVSRDDNDQLGLFYDKSVNWEALIEMHGIDGIQESGATQLEAYDLNDELTFSTSIWNF. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02886 299 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 MobiDBLite consensus disorder prediction 178 192 - -
Seca1g02886 299 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Seca1g02886 299 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 262 - -
Seca1g02886 299 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Seca1g02886 299 MobiDBLite consensus disorder prediction 223 245 - -
Seca1g02886 299 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Seca1g02886 299 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Seca1g02886 299 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02886 Seca-Chr1 79975517 79976416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02886 26 299 AP2-EREBP Transcription Factor Family AT3G57600 53.069 1.25e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g02886 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02886 - - gmx:100801311 461.455