Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02885 ATGAGTATTTCATCAGTTTTGCTTTGCACATCTGCCTTGTGTTCACAAAATTATGTATTTCTGTTTCCATCTACAAAGAAAGATGCGATTTCCAAAGCCCTATCGTCAAAAAATGTGTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAAATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACAAGGAGGGACATACAGAAGGAACTTAGGACTCTATCCAAAGAAGAGCGTAAAAGGCAGCAGCTTGCTGTGACAGATGTAATTAAAAGTGCAGATGTAATATTGACTACTCTGATTGGGGCTTTCTCTAAGAAACTAGACATCACTTCATTTGATTTGGTTATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCACTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAGTCACATCCATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATACAAGTGTTGCTGCACATATGCTATATGATCTCGAGGATGTAAAGAGGACATCTTCAACTGAACCAACCCTCCTTCTCATAGACACAACTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCTCGCTTAATGAAGGTGAGGCTGAGGTTGCTATGGCTCATGCAAAGAGATTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAGAACAAGGAGGGCAAGCTGAAAGATATCGAAATTTCAACAGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAGAAAGAGGTGGGCTTTCTAAGTGATCGCCGGCGAATGAACGTGGCTGTGACACGGGCAAGAAGGCAATGTTGTCTTGTCTGTGACACTGAGACAGTCAGTAGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAATATCAGAGTGCATCTGAGTACCAGAATGAGTAG 1419 0.4179 MSISSVLLCTSALCSQNYVFLFPSTKKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVILTTLIGAFSKKLDITSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHELIMDWSSKELYNSKIKAHTSVAAHMLYDLEDVKRTSSTEPTLLLIDTTGCDMEEKKDEEDSSLNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEGKLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02885 472 Gene3D - 27 252 IPR027417 -
Seca1g02885 472 CDD DEXXQc_SMUBP2 24 269 - -
Seca1g02885 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 457 IPR027417 -
Seca1g02885 472 SMART ultradead3 17 269 IPR014001 -
Seca1g02885 472 Pfam AAA domain 25 236 IPR041677 GO:0004386
Seca1g02885 472 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 27 471 - -
Seca1g02885 472 Pfam AAA domain 245 441 IPR041679 -
Seca1g02885 472 Coils Coil 123 143 - -
Seca1g02885 472 Gene3D - 268 472 IPR027417 -
Seca1g02885 472 CDD SF1_C_Upf1 270 458 IPR047187 -
Seca1g02885 472 SMART AAA_5 36 288 IPR003593 GO:0016887
Seca1g02885 472 NCBIfam IGHMBP2 family helicase 170 467 IPR004483 GO:0003677|GO:0005524
Seca1g02885 472 FunFam P-loop containing nucleoside triphosphate hydrolase 268 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02885 Seca-Chr1 79967087 79974894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02885 26 205 Core DNA Replication Machinery Family AT1G08840 27.778 8.49e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02885 - K19036 gmx:100810545 809.29