Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02881 ATGGCCGACCCTTACTCTAATCTTTTCCCATCATCATCATCATCATCCTCATCACGTTTCTTCCATTTCCCTTCTTCTTCTTCTTCAAACCCTTCTCCACACCACCCTTTTCTCCACAACTTCATCAACACCACCCCCCACACCACCACCACCTTTTTCCATCATATTGCTAGCACCACCCCTCCTTCTTCTTTCTCACCCCCTTCTCCTCCTCTAAGAGAAGAACTCCCTCTCTTAACCCTCAGCCCAGCAAAGCAAGAGGTGGAACTACATGAGGAAGAAGAAGAAGAGCAAGAAAGAGAGGACCTCTCTTGCACTCATGCCATGGATGTGGAAGATACAAGGGTGGTTAGTAGTAGTAACCCCAAAGAAGAACATGAAGAAGAAGAAGAAGAAAATGGAAGTGTGACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCAGTGTTTTCTTCTAATTCAGAAAATGGAAGTACCACTGAAGATTCTTCTGCTAATTTTAGGCTCAACAAAGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTTTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGAATGTTAAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTATAAGAGGAAGCATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGAAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAGCATAAGAGATCTCTTAAGGATCATATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGGTTTGAAGAAGAAGATGAACCAGCATCTGAAGTAGAACAAGATAATGATTCCACCACTCAGTAG 1074 0.4367 MADPYSNLFPSSSSSSSSRFFHFPSSSSSNPSPHHPFLHNFINTTPHTTTTFFHHIASTTPPSSFSPPSPPLREELPLLTLSPAKQEVELHEEEEEEQEREDLSCTHAMDVEDTRVVSSSNPKEEHEEEEEENGSVTVALHIGLPSPSAAEMASVFSSNSENGSTTEDSSANFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTTQ. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02881 357 Coils Coil 81 101 - -
Seca1g02881 357 Gene3D Classic Zinc Finger 257 331 - -
Seca1g02881 357 MobiDBLite consensus disorder prediction 87 135 - -
Seca1g02881 357 Gene3D Classic Zinc Finger 194 217 - -
Seca1g02881 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Seca1g02881 357 FunFam Zinc finger protein WIP2 248 330 - -
Seca1g02881 357 SUPERFAMILY beta-beta-alpha zinc fingers 261 299 IPR036236 -
Seca1g02881 357 SMART c2h2final6 195 217 IPR013087 -
Seca1g02881 357 SMART c2h2final6 279 299 IPR013087 -
Seca1g02881 357 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g02881 357 PANTHER ZINC FINGER PROTEIN WIP2 37 353 IPR043584 GO:0003700|GO:0010468
Seca1g02881 357 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Seca1g02881 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 299 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02881 Seca-Chr1 79825721 79827728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02881 1 353 C2H2 Transcription Factor Family AT3G57670 64.122 9.64e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g02881 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02881 - - gmx:100813583 501.13