Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g02881 | ATGGCCGACCCTTACTCTAATCTTTTCCCATCATCATCATCATCATCCTCATCACGTTTCTTCCATTTCCCTTCTTCTTCTTCTTCAAACCCTTCTCCACACCACCCTTTTCTCCACAACTTCATCAACACCACCCCCCACACCACCACCACCTTTTTCCATCATATTGCTAGCACCACCCCTCCTTCTTCTTTCTCACCCCCTTCTCCTCCTCTAAGAGAAGAACTCCCTCTCTTAACCCTCAGCCCAGCAAAGCAAGAGGTGGAACTACATGAGGAAGAAGAAGAAGAGCAAGAAAGAGAGGACCTCTCTTGCACTCATGCCATGGATGTGGAAGATACAAGGGTGGTTAGTAGTAGTAACCCCAAAGAAGAACATGAAGAAGAAGAAGAAGAAAATGGAAGTGTGACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCAGTGTTTTCTTCTAATTCAGAAAATGGAAGTACCACTGAAGATTCTTCTGCTAATTTTAGGCTCAACAAAGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTTTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGAATGTTAAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTATAAGAGGAAGCATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGAAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAGCATAAGAGATCTCTTAAGGATCATATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGGTTTGAAGAAGAAGATGAACCAGCATCTGAAGTAGAACAAGATAATGATTCCACCACTCAGTAG | 1074 | 0.4367 | MADPYSNLFPSSSSSSSSRFFHFPSSSSSNPSPHHPFLHNFINTTPHTTTTFFHHIASTTPPSSFSPPSPPLREELPLLTLSPAKQEVELHEEEEEEQEREDLSCTHAMDVEDTRVVSSSNPKEEHEEEEEENGSVTVALHIGLPSPSAAEMASVFSSNSENGSTTEDSSANFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTTQ. | 358 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g02881 | 357 | Coils | Coil | 81 | 101 | - | - | |
Seca1g02881 | 357 | Gene3D | Classic Zinc Finger | 257 | 331 | - | - | |
Seca1g02881 | 357 | MobiDBLite | consensus disorder prediction | 87 | 135 | - | - | |
Seca1g02881 | 357 | Gene3D | Classic Zinc Finger | 194 | 217 | - | - | |
Seca1g02881 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 195 | 222 | IPR013087 | - | |
Seca1g02881 | 357 | FunFam | Zinc finger protein WIP2 | 248 | 330 | - | - | |
Seca1g02881 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 261 | 299 | IPR036236 | - | |
Seca1g02881 | 357 | SMART | c2h2final6 | 195 | 217 | IPR013087 | - | |
Seca1g02881 | 357 | SMART | c2h2final6 | 279 | 299 | IPR013087 | - | |
Seca1g02881 | 357 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Seca1g02881 | 357 | PANTHER | ZINC FINGER PROTEIN WIP2 | 37 | 353 | IPR043584 | GO:0003700|GO:0010468 | |
Seca1g02881 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 197 | 217 | IPR013087 | - | |
Seca1g02881 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 279 | 299 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g02881 | Seca-Chr1 | 79825721 | 79827728 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g02881 | 1 | 353 | C2H2 Transcription Factor Family | AT3G57670 | 64.122 | 9.64e-163 | 458 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca1g02881 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g02881 | - | - | gmx:100813583 | 501.13 |