Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02874 ATGGCGCAGAAGAACAAAGCTAGGGTTTCCGATGATGAAGAAATCACCGAAGCTCAACCTCAAGAAAATAGCCTCTACCAGGTTCTTGGAGTGGACAGAACAGCCTCTCAACAGGAAATAAAGAAAGCGTATTACAAATTAGCGTTGCGGCTTCATCCTGATAAGAACCCCGGCGATGAGGAGGCTAAAGAGAAATTTCAGCAACTGCAAAAAGTTATCTCAATTCTTGGGGATGAAGAAAAACGGGCCCTCTATGATCAGACTGGTTGTGTTGATGATGCTGTGAGTGTTCTATTATTATTATTGCTTACTGCTGCAGATGAATTAATGGATCTTGCTGGAGATGTTGTTCGGAATCTTCATGAGTTTTTTAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAATTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGGAATATGAACAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGACTCACACCGATTCAAGGATATTCTTGATGAGGCTATAGCTGCTGGAGAATTAAAGGCAACAAAAGCATACCAGAAATGGGCTAAGGAAGTATCTAAAACCAAACCACCGACAAGTCCTATACGGAGGAGGGCAAGGTCAGATAAGCAGTCTGAAACAGATCTGTGTGCAATCATAGCACAGCGCCGAAGTGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAATTTCGAAATATGGTGGGGGTGATATGGTTGAACCCTCTGAAGAGGAATTCGAAGCTGCACAGAGAAAACTGGAGAGTGGAAGGTCCTCAAAAAAATCAAAGCAATCAAAGCGGAAGTAA 885 0.4169 MAQKNKARVSDDEEITEAQPQENSLYQVLGVDRTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDAVSVLLLLLLTAADELMDLAGDVVRNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSKTKPPTSPIRRRARSDKQSETDLCAIIAQRRSERKGQFDSMFSSLISKYGGGDMVEPSEEEFEAAQRKLESGRSSKKSKQSKRK. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02874 294 MobiDBLite consensus disorder prediction 270 286 - -
Seca1g02874 294 MobiDBLite consensus disorder prediction 1 15 - -
Seca1g02874 294 Gene3D DnaJ domain 8 96 IPR036869 -
Seca1g02874 294 PRINTS DnaJ domain signature 44 59 IPR001623 -
Seca1g02874 294 PRINTS DnaJ domain signature 26 44 IPR001623 -
Seca1g02874 294 PRINTS DnaJ domain signature 61 81 IPR001623 -
Seca1g02874 294 MobiDBLite consensus disorder prediction 207 231 - -
Seca1g02874 294 SUPERFAMILY Chaperone J-domain 23 92 IPR036869 -
Seca1g02874 294 CDD DnaJ 26 78 IPR001623 -
Seca1g02874 294 Pfam DnaJ domain 25 86 IPR001623 -
Seca1g02874 294 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g02874 294 MobiDBLite consensus disorder prediction 262 294 - -
Seca1g02874 294 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Seca1g02874 294 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 12 290 IPR042977 -
Seca1g02874 294 SMART dnaj_3 23 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02874 Seca-Chr1 79750612 79753085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02874 26 86 C2H2 Transcription Factor Family AT1G74250 39.394 7.02e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02874 K09529 - gmx:100793909 459.914