Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02872 ATGGAGTCTCATGATGAGACAGGATGCCAGGCTCCCGAACACCCCATTCTTTGCATTAATAATTGTGGTTTCTTTGGAAGGGCAGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACATGCTCTTGAAGCAGGAACAGGACAAACTCGCTGCCTCATCGGTTGAAAACATTGTGAATGGCGGTTCCACTGGCAATGGAAAGCAGGTCGTGACTGCAGGTGTTGTTGATGTAAAAGTTGGAACTGTGGAGGTCAAGAAAGTCTCTGCTCAGATTTCTGGGGATTCCTCCTCTGGTGAGAGCTTGGAGAATAAAGCCAAGACTGGTCCCAGCAGATGTGCCACATGCAGGAAACGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTTTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAAGACTGTTGGTCAGGAGGCCATAGCTAAAGCCAATCCAGTAATTAAGGCAGATAAGCTTGATAAAATATAG 519 0.4547 MESHDETGCQAPEHPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGGSTGNGKQVVTAGVVDVKVGTVEVKKVSAQISGDSSSGESLENKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYKTVGQEAIAKANPVIKADKLDKI. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02872 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Seca1g02872 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Seca1g02872 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Seca1g02872 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Seca1g02872 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Seca1g02872 172 Gene3D - 87 168 IPR035896 -
Seca1g02872 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Seca1g02872 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Seca1g02872 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Seca1g02872 172 Gene3D - 1 60 - -
Seca1g02872 172 FunFam Zinc finger AN1-type containing 6 86 168 - -
Seca1g02872 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02872 Seca-Chr1 79733869 79736484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02872 5 172 C2H2 Transcription Factor Family AT3G52800 42.775 1.20e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02872 - - gmx:100499995 304.679