Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02871 ATGGCTACTACATTCTGTATATACCTACTATTCCTTCTCTCTGTGACCTTTCCAATCTTCAACCTTTGTTCATCTTCATCAGAAGGGGATATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTATCTATCTGGTCAAATACTTCATCAACTCACTACTGTAACTGGACTGGAATTGCTTGCTCCACCACACCTTCACTCTCAGTTACTTCTATTGATCTTCAAAGTTTGAACCTTTCTGGGGATATCTCATCTTCTATATGTGACCTTCCAAATCTCTCTTATCTCAACCTTGCTGATAATATCTTCAACCAGCCCATTCCTCTTCATCTTTCTCAGTGTAGTGCATTGGAAACTTTGAATCTCAGTAACAATCTTATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTTCTTCCCTGAAAGTGCTTGATTTAAGCAGAAATCATATAGAGGGGATTATCCCAGAAAGCTTTGGTTCTTTGAAGAACCTTCAAGTCCTTAACTTGGGAAGTAACTTGCTGTCAGGTGATGTTCCAGCTGTGTTTGGCAATTTAACTGAGCTTGAAGTACTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATTGGTGAACTTGGAAATCTAAAGCAACTTCTGCTGCAAAGCTCTTCCTTTCAAGGTGAAATTCCAAGGTCCTTGGAGGGTTTGCATAGTTTGACACATTTAGATCTCTCTGAGAACAATCTAACAGGTGGGGTTCCTCAGTCTCTTGCATCTTCTCTCAAGAACCTGGTTTCTTTTGATGTCTCACAAAACAAGCTTTTAGGGCCATTTCCAAATGGCATGTGTAAAGGACAAGGCCTTATAAATCTCAGCCTCCATACAAATACCTTCACTGGTTCAGTACCCAACTCCATTAGTGAATGTAAGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTCTGGAGATTTCCCCATTGCATTATGGTCACTACCCAAAATTAAGCTCATTAGAGCTGAAAACAATAAATTCTCAGGACAAATACCTGAGTCAATATCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTGTTGGTAAAATTCCTCAAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTCTCTGCTTCTCTCAATGATTTCTATGGTGACCTTCCTCCAAATTTTTGTGACTCCCCTGTTATGAGCATAGTAAACCTCTCTCACAATTCTCTTTCTGGTCAAATCCCAGAGCTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGACAACAGTCTAATAGGAGAAATTCCCCCTTCTCTTGCTGAGCTACCTGTGCTGACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTAAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCAGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCCAACTCATGTTCTGATGATGACATGCCAAGACACCATAGTGGTGGTCTTACAACCTTAACATGTGCACTCATCTCTTTAGCCTTTGTTGCTGGAACTGCTATTCTTGCTGGTGGATTTATATTGTATAGGAGATCTTGCAAGGAGAATCAAGTAGGTGTTTGGCGTTCAGTGTTCTTTTATCCTCTCAGAATTACTGAGCATGATCTGCTTATAGGGATGAATGAGAAAAGCTCAATGGGAAAAGGTGGAGTTTTTGGCAAAGTTTATGCTGTGAGTTTACCTAGTGGTGAACTAGTATCTGTGAAGAAGCTAGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAGATTCTGGGGTTCTGCCATTCTGATGAGTCAGTTTTTCTTATATATGAATACTTGCATGGAGGAAGCTTAGGGGATTTGATTTCCAGTCAGAATTTTCAGTTGCCTTGGGGAGTTAGATTAAGGATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCACACTTGCTTCACAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGCAAATTTTGAGCCAAAACTGACAGATTTTGCTCTTGATAGAATTGTGGGAGAAGCTGCATTTCAATCAACCTTGGATTCTGAAGCAGCATCATCATCCTGTTACATTGCACCAGAATATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGGAGGCAAGCAGAGGCAACAGAGTCAAGTGACTCCCTTGACATTGTGAAATGGGTTAGAAGGAAAGTGAACATCACTAATGGGGTACAACAAGTTCTTGACACTAGAATATCACATACTTGTCACCAAGAAATGATTGGAGCATTAGATATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCAATGGTACAAGTTGTTAGAGGTCTTCAGTCCCTTGAGTCAAGGACTTGCATTGCAAATTTGCAGGATCCAAATGAGGAACCATCCATTCCAGTTTGA 2661 0.4074 MATTFCIYLLFLLSVTFPIFNLCSSSSEGDILLSFKASIEDSKKALSIWSNTSSTHYCNWTGIACSTTPSLSVTSIDLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSQCSALETLNLSNNLIWGTIPSQISQFSSLKVLDLSRNHIEGIIPESFGSLKNLQVLNLGSNLLSGDVPAVFGNLTELEVLDLSQNPYLVSEIPEDIGELGNLKQLLLQSSSFQGEIPRSLEGLHSLTHLDLSENNLTGGVPQSLASSLKNLVSFDVSQNKLLGPFPNGMCKGQGLINLSLHTNTFTGSVPNSISECKSLERFQVQNNGFSGDFPIALWSLPKIKLIRAENNKFSGQIPESISGAVQLEQVQLDNNSFVGKIPQGLGFVKSLYRFSASLNDFYGDLPPNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLIGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNSCSDDDMPRHHSGGLTTLTCALISLAFVAGTAILAGGFILYRRSCKENQVGVWRSVFFYPLRITEHDLLIGMNEKSSMGKGGVFGKVYAVSLPSGELVSVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFQLPWGVRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSKNILLDANFEPKLTDFALDRIVGEAAFQSTLDSEAASSSCYIAPEYGYSKKATEQLDIYSFGVVLLELVSGRQAEATESSDSLDIVKWVRRKVNITNGVQQVLDTRISHTCHQEMIGALDIALRCTSVVPEKRPSMVQVVRGLQSLESRTCIANLQDPNEEPSIPV. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02871 886 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 865 - -
Seca1g02871 886 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 526 - -
Seca1g02871 886 Gene3D Ribonuclease Inhibitor 240 526 IPR032675 -
Seca1g02871 886 FunFam - 588 669 - -
Seca1g02871 886 Gene3D Transferase(Phosphotransferase) domain 1 670 880 - -
Seca1g02871 886 SUPERFAMILY L domain-like 206 519 - -
Seca1g02871 886 ProSiteProfiles Leucine-rich repeat profile. 144 165 IPR001611 GO:0005515
Seca1g02871 886 CDD STKc_IRAK 599 866 - -
Seca1g02871 886 Gene3D Phosphorylase Kinase; domain 1 588 669 - -
Seca1g02871 886 Gene3D Ribonuclease Inhibitor 184 239 IPR032675 -
Seca1g02871 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 871 - -
Seca1g02871 886 FunFam Leucine-rich repeat family protein 27 184 - -
Seca1g02871 886 SUPERFAMILY L domain-like 26 303 - -
Seca1g02871 886 SMART LRR_typ_2 239 262 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 142 165 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 264 288 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 94 118 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 166 189 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 455 478 IPR003591 -
Seca1g02871 886 SMART LRR_typ_2 190 215 IPR003591 -
Seca1g02871 886 Pfam Protein tyrosine and serine/threonine kinase 598 862 IPR001245 GO:0004672|GO:0006468
Seca1g02871 886 SUPERFAMILY Protein kinase-like (PK-like) 602 862 IPR011009 -
Seca1g02871 886 ProSiteProfiles Protein kinase domain profile. 594 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02871 886 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca1g02871 886 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Seca1g02871 886 PRINTS Leucine-rich repeat signature 242 255 - -
Seca1g02871 886 PRINTS Leucine-rich repeat signature 455 468 - -
Seca1g02871 886 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Seca1g02871 886 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Seca1g02871 886 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Seca1g02871 886 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02871 Seca-Chr1 79681601 79685262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02871 32 866 Receptor kinase-like Gene Family AT5G06940 65.357 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g02871 PK_Tyr_Ser-Thr 3.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02871 - - gmx:100794428 1532.69