Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02865 ATGGAGCAAGCTACGTTAGGGTTACGTGGATCCATTCACGACCGCACCGTACTTGAGTCCATTCAATTCAACGAAGAAATCCAGGGAATCGTGGCGCCGGCACCGGCGCCGGAAAACGCCAGTTCGTTCACTGCGCTGCTTGAGCTCCCGCCGACTCAGGCGGTTGAGCTCCTTCACTCGCCGGATTGCGACGGAGCCGCTGCTAGGAGACCGCCTTCTTGCCACGTCAGCGTGAATCAGAAACCTTATCTGCTCAACTCTTTCAGTGGCAATTTGACGTTCCCTACCAACGCTGCCTTAATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGAGAGAACTCGCCGCCGGGAGAGGCTCAACTGGTTCCGGCCGGGTCCGGTGCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCTTGCTCTACGCAGGGGTGCGTTTCGGTTTCGGATCCCGCGGTTGAGAACAAGAATCAGAGGAGCACAAAGAGAAAGGAGCGAGAGAAGAAGGGCAGAGTGTCCATGAAGAAGAGTAAGAGCGTCGCCGATGAGAACTCCGGTGACGGCGAGAAGCTTCCTTACGTCCATGTTCGCGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAGAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGTGACAAGATATCTGGAACAGCATTGGTTCTGGATGAAATAATCAACCATGTGCAATCTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCTTAGACAGTTTACTTACTACTGATGGGCCATCTCTAATGGACAGTAACTTACCTAGCATGGTTACCCCTCTCATGTGGCCAGAAATCCCACTCAATGGTAACAGACAGCATTATCAACAACAGTGGCAATTTGATGCAATCCACCAACCACTTTGGGGGAGGGAAGAAGATAACCATAATTTCATGACTCCAGAAAACTCACTTTTGAGTTATGACTCATCGGCAAATTCAGCATCTCTGCACTCAAACCAATTGAAGATGGAGCTCTGA 1107 0.5131 MEQATLGLRGSIHDRTVLESIQFNEEIQGIVAPAPAPENASSFTALLELPPTQAVELLHSPDCDGAAARRPPSCHVSVNQKPYLLNSFSGNLTFPTNAALIERAAKFSVFAGENSPPGEAQLVPAGSGANLDRVKNEPQETDSNPCSTQGCVSVSDPAVENKNQRSTKRKEREKKGRVSMKKSKSVADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLTTDGPSLMDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQFDAIHQPLWGREEDNHNFMTPENSLLSYDSSANSASLHSNQLKMEL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02865 368 Coils Coil 248 268 - -
Seca1g02865 368 CDD bHLH_AtBPE_like 198 283 - -
Seca1g02865 368 Gene3D - 205 277 IPR036638 GO:0046983
Seca1g02865 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Seca1g02865 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 127 352 IPR024097 GO:0006355
Seca1g02865 368 FunFam transcription factor bHLH48-like isoform X1 205 277 - -
Seca1g02865 368 MobiDBLite consensus disorder prediction 140 161 - -
Seca1g02865 368 MobiDBLite consensus disorder prediction 178 195 - -
Seca1g02865 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Seca1g02865 368 SMART finulus 214 264 IPR011598 GO:0046983
Seca1g02865 368 MobiDBLite consensus disorder prediction 118 195 - -
Seca1g02865 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02865 Seca-Chr1 79494935 79502719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02865 18 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.987 4.65e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g02865 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02865 - - vun:114168708 632.484