Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02860 ATGGATTCAAATTCCCGTTATCAACTCCAACAAAATTCTGGGTTGCTCCGTTTTCGCTCTGCTCCTAGTTCAGTTCCATCAAGTTTCAAACAAGGTGGTGAAGGTGGTGGTGCTGCCAATAATGGTAATAACCAGTGGGAGGATTTTGAGTCAGAGAGGTTGGTTTTTAGATTCATGAATTCTGGTGAGGGCAATGATAATAATAATACAGATTCTTCTCCTAGCTTTCGAGAATTCGTGCCTTGTAATAATACTAAAGCAGCCAATGAATCTTCAATGTCACCACTGAGCCGCATGAATTCTCAGCAGGGTTATAGTAACCATGGTGCTAGTTCAAGCATGATGGTTGGTTCTATTGGAATGGATCATAACCACCACAAAGGCTTTAACTCCAATCTTATTAGGCAAAATAGTGTACCTGCTGCTGGTCATTTCTCTAGCATCATATCCTTTCAGAATGGGTATGATAGTATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGTAGTGATGGTGAACTTAGTCTATCTATGAACACATTGAAGAATCAAATTAACTTCTCACCAAGAAGTCCTTCTTCTTTGGGAATATTATCACAGACTTCCAAAATGGGTAGTGAAGGCATTGGGACAACTAGATTGATCTCTTATGATTCTTGGAATGGGACTTCACATCTCTCAGATAAACAAAGAGAGAGAAATGATAAGTTACTTTCTGATGCTCAGAATGGAGAGCTGGGAAATCAAGTTCATGCACTATCACATCACTTGAGTTTGCAAAGAAAGTCATCAGAGATGTTTGCAATGGAGAATTTTCTTCAGTTCCCAGATTCTGTTCCTAGCAATCTCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAGCGAATGAGAAAATTGCAAGAGCTAGTTCCAAACATTGACAAGCAAACCAGCACATCAGACATGTTGGACTTAGCTGTTGTGTACATTAAAGATCTTCAGAAACAATTTAAGACCCTGAGTGAAAAACGAGCTAAATGCAAATGTTCATGCATGCAGAAGTCAGAAAAGAATCAAACTACTTGA 1104 0.3986 MDSNSRYQLQQNSGLLRFRSAPSSVPSSFKQGGEGGGAANNGNNQWEDFESERLVFRFMNSGEGNDNNNTDSSPSFREFVPCNNTKAANESSMSPLSRMNSQQGYSNHGASSSMMVGSIGMDHNHHKGFNSNLIRQNSVPAAGHFSSIISFQNGYDSMKGVGNYGGVNGSDGELSLSMNTLKNQINFSPRSPSSLGILSQTSKMGSEGIGTTRLISYDSWNGTSHLSDKQRERNDKLLSDAQNGELGNQVHALSHHLSLQRKSSEMFAMENFLQFPDSVPSNLRAKRGFATHPRSIAERVRRTRISERMRKLQELVPNIDKQTSTSDMLDLAVVYIKDLQKQFKTLSEKRAKCKCSCMQKSEKNQTT. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02860 367 Gene3D - 291 365 IPR036638 GO:0046983
Seca1g02860 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 361 - -
Seca1g02860 367 MobiDBLite consensus disorder prediction 1 45 - -
Seca1g02860 367 MobiDBLite consensus disorder prediction 61 111 - -
Seca1g02860 367 FunFam Transcription factor bHLH130 family 290 360 - -
Seca1g02860 367 Pfam Helix-loop-helix DNA-binding domain 295 340 IPR011598 GO:0046983
Seca1g02860 367 SMART finulus 295 345 IPR011598 GO:0046983
Seca1g02860 367 MobiDBLite consensus disorder prediction 60 111 - -
Seca1g02860 367 MobiDBLite consensus disorder prediction 1 30 - -
Seca1g02860 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 339 IPR011598 GO:0046983
Seca1g02860 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 358 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02860 Seca-Chr1 79364422 79367682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02860 13 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.742 7.60e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g02860 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02860 - - gmx:100796534 423.705