Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02856 ATGGCTGCTGCTAGTGCTAGTGTTTTCTTCTACATCTTCTCCACCTCCTTATTTTTGCTAGTTTTCACTTTCCTTATCAAGTCCTTCACCACAAGAACCACAAATTGCAACACTAAACCCCCACCAAGCCCACCATCACTACCCATCACTGGCCACCTTCACCTTCTAGGCTCAGTCATACCAAAATCATTCCAAACTCTAGCTCGCCTCTATGGCCCTCTCATTCAACTCCATTTAGGTGCCTCAACATGCATAGTTGTCTCCAATGCCCAAGTTGCCAAAGAAGTCATGAAAACACATGACCTCAATTTCTGCTACAGACCCCAATTTGGATCCTCTGACTACTTTTTATACAAAGGGTCTTACTTCATCACTGCCCCATATGGCCCTTATTGGAGGTTCATGAAGAAGCTATGTGTTACTCAACTACTCTCAAGCTCACAGCTTGGTCGCTTTATGCACATCAGAGAGCAAGAGATAAAGAACCTCTTAAAATCTCTCATGTTCTGTTCTAGTGAAGGCAGGGCCACGGATTTGAGCTTTGACCTCACTGCTCTGACCAACAATATCCTATGTCGGATGGCTATGAGCACCACATGTTTCGACAAAGACAATGATGCTGAGAAGATTCAATGGTTGGTTAAGGAGTTCTTGCACGTTGGAGCTAAATTGAGCATGGGTGAGATATTTGGGCCTTTGGGAAAGTTGGACTTATTTGGGTATGGGAAAAAGCTTGTGAAAATAGTGGGCAAGTTTGATCAGATTTTAGAGCGTATCTTGAAGGAACATGAAGAGAAAGACAATGAGACTTGTCAAGGAGACATGATGGATATCCTATTACAAGTTTATAGAAACCCAAATGCTGAAGTGAGGTTAACAAGGAATGATATCAAGGCCTTCTTCCTAGATATTTTCCTTGCGGGAACAGACACATCTTCAGTGGCATTACAATGGGCCATGGCAGAGATAATGAACAACCCAGGAGTGTTAAAGAAGTTAAAGGCAGAGATTGATGAAGTGGTGGGGACTAGCAGGTTGGTCAGAGAATCAGACATTCAAAATTTACCTTACCTCCAAGCTTTTGTGAAGGAAGTGCTGAGACTTCATCCAACAGCACCGTTTGCTCTCAGACAATCTGCTGAAGACTGCAACATCAACGGCTATGATGTGAAGGGCCAGACCAGGACACTGATCAATGTTTATGCCATCATGAGGGACCCAGAAGCATGGGTTAATCCAGAGGAGTTTATACCAGAGAGGTTCTTGGAAGGTAGTGATGATGGGATTAAAATGGATGGTAATAATGATTTCAGGTATATTCCATTTGGGTTTGGTAGGAGGGGTTGTCCTGGAAGTTCCCTTGCTTTAATGGTGATACAAGTGACTATTGCTGCTTTGGTCCAATGTTTTGAATGGAAAATCAAAGGGGGAGGTAAGGTTAATATGGAAGAAGGGTCATCATTTTCTGCAGGATTGGCAAAGCCATTAGTTTGTTACCCCATCACTAGTTTTAATCCCTTAAAACAGAACAAGTCTCATCTTCTACCACCAAGTCCACTAGCCTTACCCATCATTGGACACCTCCACCTTCTTGCTCCAATACCACACCAAGCTCTGCACAAGCTCTCAAACCGCTATGGACCCATAATGCACCTTTTCCTTGGTTCTGTCCCTTGTGTTGTAGCTTCTACACCAGAAACAGCCAAAGAGTTTCTTAAAACACACGAAACCCACTTCTCCAACCGTCCTCAAAGTTCTGCTGTTGATTATCTAACATATGGCTCACAAGATTTCTCCTTTGCCCCATATGGACCTTATTGGAAGAGACAAGAGACAACAAGGTTTTTGTCACTTTTGCTCAAGAAAGGGAAGGATGGTGAGGTTGTTGATGTTGGAGGAGAATTGTTGACACTGTCTAATAACGTTGTGTCAAGGATGATTATGAGCCAAACATGCTCAGAGAATGATGGTGAAGCAGAGGAGGTGAGGAAGTTGGTGCAAGACACAGCACATCTCACAGGGAAGTTCAATGTGTCTGACTTTATTTGGTTGTTTAAGAACTGGGATTTGCAAGGGTTCAGCAAAAGGCTAAAGGAAATTAGGGACAGGTTTGACACCATGATGGAGAGAGTGATCAAGGAGCATCAAGAGGAAAGGAGGAAAAGAAAGGAAGTTGGTGGAGGAGATGGTGAAATCAAGGATCTACTTGATATATTATTGGACATATTTGAAGATGAGAACTCTGACATAAAATTGACAATGGAGAACATAAAGGCTTTCATCTTGGATATATTTATGGCAGGAACTGACACTTCAGCCTTAACCACTGAATGGGCACTGGCAGAGTTGATTAACCATCCACATGTGATGGAGAGAGCAAGACAAGAGATCAATGCTGTAGTTGGAAATAGTAGAATAGTAGAAGAATCAGACATTTTCAACCTTCCTTACCTGCAAGCTATAGTCAAAGAAACACTGAGGATTCACCCCACAGGTCCATTAATTGTTAGAGAATCATCTGAAAGGTGCACTATCTGGGGCTATGAGATTCCAGCAAAGACTCAATTGTTTGTGAATGTGTGGGCTATTGGCAGGGACCCCAATCACTGGGAGAACCCACTTGAGTTCAGACCTGAGAGGTTTATTAGTGAAGAGGGAAGTGGGAAGAGTCAATTAGATGTGAGGGGGCAACATTTTCACCTAATTCCATTTGGAAGTGGAAGAAGAGGGTGTCCTGGAACCTCACTGGCTTTGCAAGTTGTCCAAACAAACCTTGCTGCTATGATTCAGTGTTTTGAATGGAAGGTTAATGGAGGCAATGAGACTGTTGACATGGAAGAGAAACCTGGGTTAACCCTTTCAAGGGCACATCCCTTAATCTGTGTTCCTGTGCCTAGGCTTAATCCTTTTCCTTCTATAAATATGGCTGATTTTCAAGGCTATATTCAAGTCTTCCTCATTTGTGTGCTCTCCACAATCCTTCTTGTATTCATTCTCAAAAGAAAACAAAAGAAGACCCTCCTTCCACCAAGTCCCCTGCCACTACCCATCATTGGACACCTCCACCTTCTCTCTCCAATACCTCACCAAGATTTTCACAACCTCTCAATCCACTATGGCCCCATAATACACCTTTTCCTTGGCTCCATCCCTTGTGTCATAGCCAACACAGCAGAAGCTGCCAAAGAATTCCTCAAAACTCATGAAACCTCCTTCTCAAACCGCCCTGCTCAAACAGTTGCAGTTGAAGCCTTAACCTATGGTTTCCAAGACTTCCTCTTTGCACCTTATGGACCTTATTGGAAGTTTATGAAGAAGCTTTGCATGTCTGAACTTCTTGGTGGCCACATACTAGACCAGTTCCTTTCTCTAAGGCAACAAGAGACAAAGAGGTTCATCAAACTTGTGCACAAGAAAGGGATGGCAGGTGAGGCAGTGGATTTTGGTGCAGAGTTCATGAAGCTTTCGAATAATATAGTGTCTAGAATGACAATGAGTCAAACGAGTTCTTCTGAGAATGATAATGAAGCAGAAGAGATGAGGAAGCTGGTGGCGGATAGTGCTGAGCTCATAGGGAAGTTTAACATATCAGACTTCATTTGGTTCTTGAAGAGTTTTGATCTGCAAGGATTCAACAAAAGGCTTAGGGAAATTCAGGTCAGGTTTGACATTATGTTGGATAGAGTGATAAAGGAGCATGAAGAGGAGAGAAGGGACAGAAAGGAAAAGAGAGGAGGAAATGGAACATATCAGATTAAGGATATACTTGATGTTTTATTAGACATACATGAAGATGAAAGTTCTGAAATGCAATTGACTAAAGAGAACATAAAGGCCTTCATTTTGGACATACTTGTTGCTGGGACTGACACATCTGCTGTGACCATGGAATGGGCAATGGCAGAGTTAATAAACAATCCATATGTGTTGGAGAGAGCAAGGCAAGAGATAGATGCAGTTGTTGGAAAGAGTAGAATAATAGAAGAATCAGATATTGTGAACCTTCCTTACCTACGAGCCATAGTTAAAGAAACATTAAGGCTTCACCCAGCAGGCCCATTAATTTTTAGGGAGTCATCTAAAAATGCTATAGTTTGTGGTTATAATATTCCAGCCAAGACTCGATTATTTATCAATGTTTGGGCCATTGGTAGGGACCCCAATCACTGGGAGAGCCCACTTGAGTTTAGGCCAGAGAGGTTTATTGGTGAAGAGGGAAATGGGCAGAGTCAATTGGATGTTAGGGGACAACATTATCATCTAATTCCATTTGGAAGTGGAAGAAGAGGGTGTCCTGGAACCTCTCTGGCATTGCAGGTTGTGCATGTGAATCTAGGTGCTGTGATTCAGTGTTTCCAATGGAAGGTTGAAGGTGGCAATGGCACAGTTGACATGGAAGAGAAGCCAGGTATAACTCTTCCCAGGGCTCACCCTGTAGTTTGTGTCCCTCTTCCAAGGCTTAATCCATTTCCTTCTTTGTGA 4482 0.4277 MAAASASVFFYIFSTSLFLLVFTFLIKSFTTRTTNCNTKPPPSPPSLPITGHLHLLGSVIPKSFQTLARLYGPLIQLHLGASTCIVVSNAQVAKEVMKTHDLNFCYRPQFGSSDYFLYKGSYFITAPYGPYWRFMKKLCVTQLLSSSQLGRFMHIREQEIKNLLKSLMFCSSEGRATDLSFDLTALTNNILCRMAMSTTCFDKDNDAEKIQWLVKEFLHVGAKLSMGEIFGPLGKLDLFGYGKKLVKIVGKFDQILERILKEHEEKDNETCQGDMMDILLQVYRNPNAEVRLTRNDIKAFFLDIFLAGTDTSSVALQWAMAEIMNNPGVLKKLKAEIDEVVGTSRLVRESDIQNLPYLQAFVKEVLRLHPTAPFALRQSAEDCNINGYDVKGQTRTLINVYAIMRDPEAWVNPEEFIPERFLEGSDDGIKMDGNNDFRYIPFGFGRRGCPGSSLALMVIQVTIAALVQCFEWKIKGGGKVNMEEGSSFSAGLAKPLVCYPITSFNPLKQNKSHLLPPSPLALPIIGHLHLLAPIPHQALHKLSNRYGPIMHLFLGSVPCVVASTPETAKEFLKTHETHFSNRPQSSAVDYLTYGSQDFSFAPYGPYWKRQETTRFLSLLLKKGKDGEVVDVGGELLTLSNNVVSRMIMSQTCSENDGEAEEVRKLVQDTAHLTGKFNVSDFIWLFKNWDLQGFSKRLKEIRDRFDTMMERVIKEHQEERRKRKEVGGGDGEIKDLLDILLDIFEDENSDIKLTMENIKAFILDIFMAGTDTSALTTEWALAELINHPHVMERARQEINAVVGNSRIVEESDIFNLPYLQAIVKETLRIHPTGPLIVRESSERCTIWGYEIPAKTQLFVNVWAIGRDPNHWENPLEFRPERFISEEGSGKSQLDVRGQHFHLIPFGSGRRGCPGTSLALQVVQTNLAAMIQCFEWKVNGGNETVDMEEKPGLTLSRAHPLICVPVPRLNPFPSINMADFQGYIQVFLICVLSTILLVFILKRKQKKTLLPPSPLPLPIIGHLHLLSPIPHQDFHNLSIHYGPIIHLFLGSIPCVIANTAEAAKEFLKTHETSFSNRPAQTVAVEALTYGFQDFLFAPYGPYWKFMKKLCMSELLGGHILDQFLSLRQQETKRFIKLVHKKGMAGEAVDFGAEFMKLSNNIVSRMTMSQTSSSENDNEAEEMRKLVADSAELIGKFNISDFIWFLKSFDLQGFNKRLREIQVRFDIMLDRVIKEHEEERRDRKEKRGGNGTYQIKDILDVLLDIHEDESSEMQLTKENIKAFILDILVAGTDTSAVTMEWAMAELINNPYVLERARQEIDAVVGKSRIIEESDIVNLPYLRAIVKETLRLHPAGPLIFRESSKNAIVCGYNIPAKTRLFINVWAIGRDPNHWESPLEFRPERFIGEEGNGQSQLDVRGQHYHLIPFGSGRRGCPGTSLALQVVHVNLGAVIQCFQWKVEGGNGTVDMEEKPGITLPRAHPVVCVPLPRLNPFPSL. 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02856 1493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1424 1433 IPR017972 GO:0005506|GO:0016705
Seca1g02856 1493 PRINTS P450 superfamily signature 1340 1351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS P450 superfamily signature 1287 1304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS P450 superfamily signature 1431 1442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS P450 superfamily signature 1422 1431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 SUPERFAMILY Cytochrome P450 1009 1486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 985 1482 - -
Seca1g02856 1493 CDD CYP93 1040 1483 - -
Seca1g02856 1493 Gene3D Cytochrome P450 507 961 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 FunFam Cytochrome P450 family protein 608 961 - -
Seca1g02856 1493 FunFam Cytochrome P450 family protein 1000 1481 - -
Seca1g02856 1493 CDD CYP93 547 963 - -
Seca1g02856 1493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 904 913 IPR017972 GO:0005506|GO:0016705
Seca1g02856 1493 Gene3D Cytochrome P450 995 1481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 Gene3D Cytochrome P450 26 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 SUPERFAMILY Cytochrome P450 516 966 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 567 588 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 776 802 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 756 773 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 911 934 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 819 837 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 901 911 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 859 883 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 PRINTS E-class P450 group I signature 543 562 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Seca1g02856 1493 CDD CYP93 72 500 - -
Seca1g02856 1493 FunFam Cytochrome P450 family protein 32 498 - -
Seca1g02856 1493 Pfam Cytochrome P450 611 958 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 Pfam Cytochrome P450 516 613 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 Pfam Cytochrome P450 1009 1481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 Pfam Cytochrome P450 41 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02856 1493 SUPERFAMILY Cytochrome P450 41 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02856 Seca-Chr1 79266344 79279908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02856 515 970 Cytochrome P450 AT2G42250 40.541 1.00e-121 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02856 K24188 - gmx:100779342 785.023